Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2087 | 3' | -44.2 | NC_001348.1 | + | 639 | 0.67 | 0.999955 |
Target: 5'- aUGUCACCAAagcCAACGUcgccaucUG-GAGUACu -3' miRNA: 3'- -AUAGUGGUUga-GUUGCA-------ACuCUUAUG- -5' |
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2087 | 3' | -44.2 | NC_001348.1 | + | 49772 | 0.66 | 0.999992 |
Target: 5'- aGUCGCCAAUUaacguuaagCGACGUUGAaauuGAcUGCa -3' miRNA: 3'- aUAGUGGUUGA---------GUUGCAACU----CUuAUG- -5' |
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2087 | 3' | -44.2 | NC_001348.1 | + | 66648 | 1.11 | 0.024734 |
Target: 5'- uUAUCACCAACUCAACGUUGAGAAUACa -3' miRNA: 3'- -AUAGUGGUUGAGUUGCAACUCUUAUG- -5' |
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2087 | 3' | -44.2 | NC_001348.1 | + | 82167 | 0.66 | 0.999996 |
Target: 5'- aUAUCGCCAugguUUCAaaacuACaUUGGGggUACa -3' miRNA: 3'- -AUAGUGGUu---GAGU-----UGcAACUCuuAUG- -5' |
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2087 | 3' | -44.2 | NC_001348.1 | + | 89771 | 0.67 | 0.999977 |
Target: 5'- -uUCGCUGGCUCAACuaauauUUGAGGuuAUGCg -3' miRNA: 3'- auAGUGGUUGAGUUGc-----AACUCU--UAUG- -5' |
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2087 | 3' | -44.2 | NC_001348.1 | + | 96806 | 0.7 | 0.998499 |
Target: 5'- --cCACCAACaguaaaCAACGgccgUGAGAAUAUg -3' miRNA: 3'- auaGUGGUUGa-----GUUGCa---ACUCUUAUG- -5' |
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2087 | 3' | -44.2 | NC_001348.1 | + | 106737 | 0.68 | 0.999816 |
Target: 5'- aAUCGCC-GCUCGGCGUccgggcgGAGGAgaccgACg -3' miRNA: 3'- aUAGUGGuUGAGUUGCAa------CUCUUa----UG- -5' |
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2087 | 3' | -44.2 | NC_001348.1 | + | 108503 | 0.66 | 0.999992 |
Target: 5'- cGUCuCCAACaggaGACGcgGGGGAUACa -3' miRNA: 3'- aUAGuGGUUGag--UUGCaaCUCUUAUG- -5' |
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2087 | 3' | -44.2 | NC_001348.1 | + | 116247 | 0.67 | 0.999956 |
Target: 5'- --gCACCGAUUCAGCGgauuuaugGAGuccgGUACa -3' miRNA: 3'- auaGUGGUUGAGUUGCaa------CUCu---UAUG- -5' |
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2087 | 3' | -44.2 | NC_001348.1 | + | 121289 | 0.66 | 0.999992 |
Target: 5'- cGUCuCCAACaggaGACGcgGGGGAUACa -3' miRNA: 3'- aUAGuGGUUGag--UUGCaaCUCUUAUG- -5' |
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2087 | 3' | -44.2 | NC_001348.1 | + | 123055 | 0.68 | 0.999816 |
Target: 5'- aAUCGCC-GCUCGGCGUccgggcgGAGGAgaccgACg -3' miRNA: 3'- aUAGUGGuUGAGUUGCAa------CUCUUa----UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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