Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20871 | 5' | -50.4 | NC_004689.1 | + | 51097 | 0.66 | 0.959362 |
Target: 5'- --uGCGCAGUGAUUUcCAAGUcuacgCCUGc -3' miRNA: 3'- cauUGCGUCGCUAGGaGUUCAa----GGAC- -5' |
|||||||
20871 | 5' | -50.4 | NC_004689.1 | + | 45654 | 0.66 | 0.955231 |
Target: 5'- -cAGCGCGGCGAUcaCCUguAGagUCUUGc -3' miRNA: 3'- caUUGCGUCGCUA--GGAguUCa-AGGAC- -5' |
|||||||
20871 | 5' | -50.4 | NC_004689.1 | + | 53153 | 0.67 | 0.924508 |
Target: 5'- -gAACGCGGCGAUuucgaCCU-GAGUUCgUGu -3' miRNA: 3'- caUUGCGUCGCUA-----GGAgUUCAAGgAC- -5' |
|||||||
20871 | 5' | -50.4 | NC_004689.1 | + | 20831 | 0.72 | 0.698632 |
Target: 5'- aGUuGCGCAGCGuGUCCgagAAGUUCUUGa -3' miRNA: 3'- -CAuUGCGUCGC-UAGGag-UUCAAGGAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home