miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20874 3' -50.8 NC_004689.1 + 36219 0.65 0.968357
Target:  5'- aCGCGAUcGUUUaUCGCGCacguuaauguaaugGUuuuaACGCGCa -3'
miRNA:   3'- cGCGCUAaUAAA-GGCGCG--------------CA----UGCGCG- -5'
20874 3' -50.8 NC_004689.1 + 9089 0.66 0.966004
Target:  5'- aCGgGAaucaggugGUUUCCGUGCGUGgGUGa -3'
miRNA:   3'- cGCgCUaa------UAAAGGCGCGCAUgCGCg -5'
20874 3' -50.8 NC_004689.1 + 12907 0.66 0.962433
Target:  5'- uCGaCGGg---UUCUG-GUGUGCGCGCa -3'
miRNA:   3'- cGC-GCUaauaAAGGCgCGCAUGCGCG- -5'
20874 3' -50.8 NC_004689.1 + 25037 0.66 0.954526
Target:  5'- uGCGCGccagUGUgagUgGCGgGUugGCGUu -3'
miRNA:   3'- -CGCGCua--AUAaa-GgCGCgCAugCGCG- -5'
20874 3' -50.8 NC_004689.1 + 51909 0.66 0.954526
Target:  5'- -gGCGAUcuUGgccUCGCGUGUcAUGCGCa -3'
miRNA:   3'- cgCGCUA--AUaaaGGCGCGCA-UGCGCG- -5'
20874 3' -50.8 NC_004689.1 + 36484 0.67 0.942665
Target:  5'- cGCGCGAcacacacaCGCGUGgaauCGCGUg -3'
miRNA:   3'- -CGCGCUaauaaag-GCGCGCau--GCGCG- -5'
20874 3' -50.8 NC_004689.1 + 37484 0.67 0.940677
Target:  5'- uGUGUGAcgUGUgcgCGUGCGgccaUACGCGCg -3'
miRNA:   3'- -CGCGCUa-AUAaagGCGCGC----AUGCGCG- -5'
20874 3' -50.8 NC_004689.1 + 1528 0.67 0.930633
Target:  5'- uGCGCGugcugcgaaUCGuCGUGUGCGUGCu -3'
miRNA:   3'- -CGCGCuaauaaa--GGC-GCGCAUGCGCG- -5'
20874 3' -50.8 NC_004689.1 + 12515 0.67 0.922591
Target:  5'- aGCGCGGUguug-CCcgaccgcacguaauGCGUGUGCGuUGCg -3'
miRNA:   3'- -CGCGCUAauaaaGG--------------CGCGCAUGC-GCG- -5'
20874 3' -50.8 NC_004689.1 + 40086 0.68 0.918366
Target:  5'- uGCGCGuc--UUUCCGaUGCGcugaauguccGCGCGCa -3'
miRNA:   3'- -CGCGCuaauAAAGGC-GCGCa---------UGCGCG- -5'
20874 3' -50.8 NC_004689.1 + 64005 0.68 0.912095
Target:  5'- uGCGCGcacccugUUCCaCGCaGUAgGCGCg -3'
miRNA:   3'- -CGCGCuaaua--AAGGcGCG-CAUgCGCG- -5'
20874 3' -50.8 NC_004689.1 + 4368 0.68 0.894511
Target:  5'- aCGCaugaacugUCCGCGCGUGacuCGCGUa -3'
miRNA:   3'- cGCGcuaauaa-AGGCGCGCAU---GCGCG- -5'
20874 3' -50.8 NC_004689.1 + 67701 0.69 0.884293
Target:  5'- aGCGCGAUg---UUgGCGCGcuUGCGUu -3'
miRNA:   3'- -CGCGCUAauaaAGgCGCGCauGCGCG- -5'
20874 3' -50.8 NC_004689.1 + 21786 0.69 0.860707
Target:  5'- -aGCGAUUGUacggUUCGCGuCGUccaACGCGg -3'
miRNA:   3'- cgCGCUAAUAa---AGGCGC-GCA---UGCGCg -5'
20874 3' -50.8 NC_004689.1 + 43714 0.69 0.859882
Target:  5'- aGCGCGcgUGUgcCCGCGCGcuaGCucaccacuucacaGCGCc -3'
miRNA:   3'- -CGCGCuaAUAaaGGCGCGCa--UG-------------CGCG- -5'
20874 3' -50.8 NC_004689.1 + 65594 0.69 0.84895
Target:  5'- uUGCGGcagacgaaCCGCGCGUGCGCu- -3'
miRNA:   3'- cGCGCUaauaaa--GGCGCGCAUGCGcg -5'
20874 3' -50.8 NC_004689.1 + 12271 0.71 0.78792
Target:  5'- cCGCGAggaacaUCCaCGUGUACGCGUu -3'
miRNA:   3'- cGCGCUaauaa-AGGcGCGCAUGCGCG- -5'
20874 3' -50.8 NC_004689.1 + 36522 0.73 0.667733
Target:  5'- uGCGCGcccgauaCCGCGCGggcaUACGUGCg -3'
miRNA:   3'- -CGCGCuaauaaaGGCGCGC----AUGCGCG- -5'
20874 3' -50.8 NC_004689.1 + 36266 0.82 0.251215
Target:  5'- cGCGCGAacaaa-CCagGCGCGUACGCGCg -3'
miRNA:   3'- -CGCGCUaauaaaGG--CGCGCAUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.