Results 21 - 31 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20875 | 5' | -54.4 | NC_004689.1 | + | 20161 | 0.69 | 0.694552 |
Target: 5'- -aGCGcCGAccaguUUCCACGCgACGaccagGCCCa -3' miRNA: 3'- agCGC-GCU-----AAGGUGCG-UGCaua--CGGG- -5' |
|||||||
20875 | 5' | -54.4 | NC_004689.1 | + | 43720 | 0.69 | 0.694552 |
Target: 5'- ---aGgGAga--GCGCGCGUGUGCCCg -3' miRNA: 3'- agcgCgCUaaggUGCGUGCAUACGGG- -5' |
|||||||
20875 | 5' | -54.4 | NC_004689.1 | + | 52170 | 0.69 | 0.683886 |
Target: 5'- cUGCGUGAcUUCCucgacGCGCAUGUA-GCCg -3' miRNA: 3'- aGCGCGCU-AAGG-----UGCGUGCAUaCGGg -5' |
|||||||
20875 | 5' | -54.4 | NC_004689.1 | + | 64873 | 0.69 | 0.673174 |
Target: 5'- cUGCgGUGAccugUCCcuuGCGCACGUcgGUCCa -3' miRNA: 3'- aGCG-CGCUa---AGG---UGCGUGCAuaCGGG- -5' |
|||||||
20875 | 5' | -54.4 | NC_004689.1 | + | 32343 | 0.7 | 0.619251 |
Target: 5'- cCGUGCuuGAUUUCACuGCugGUcgGCCa -3' miRNA: 3'- aGCGCG--CUAAGGUG-CGugCAuaCGGg -5' |
|||||||
20875 | 5' | -54.4 | NC_004689.1 | + | 13015 | 0.7 | 0.586951 |
Target: 5'- aUCGCaGCaccgCCGCGCugGcgaAUGCCCg -3' miRNA: 3'- -AGCG-CGcuaaGGUGCGugCa--UACGGG- -5' |
|||||||
20875 | 5' | -54.4 | NC_004689.1 | + | 8343 | 0.71 | 0.565585 |
Target: 5'- aCGCGCGGauUUCaCugGCAguuCGUA-GCCCc -3' miRNA: 3'- aGCGCGCU--AAG-GugCGU---GCAUaCGGG- -5' |
|||||||
20875 | 5' | -54.4 | NC_004689.1 | + | 55078 | 0.71 | 0.544427 |
Target: 5'- gCGCGUGAUcaUUCACGUugccgugguuggACGUucccaGUGCCCa -3' miRNA: 3'- aGCGCGCUA--AGGUGCG------------UGCA-----UACGGG- -5' |
|||||||
20875 | 5' | -54.4 | NC_004689.1 | + | 36267 | 0.72 | 0.523533 |
Target: 5'- aCGCGCGAacaaaCCAgGCGCGUAcGCgCg -3' miRNA: 3'- aGCGCGCUaa---GGUgCGUGCAUaCGgG- -5' |
|||||||
20875 | 5' | -54.4 | NC_004689.1 | + | 38365 | 0.73 | 0.462914 |
Target: 5'- gUGUGCGAUcagcgcaucaUCCGCGCugauUAUGCCCg -3' miRNA: 3'- aGCGCGCUA----------AGGUGCGugc-AUACGGG- -5' |
|||||||
20875 | 5' | -54.4 | NC_004689.1 | + | 39540 | 0.73 | 0.462914 |
Target: 5'- cUUGCGCGGUUCCugcaugagcaGCGCAucCGUaaGUGCgCCa -3' miRNA: 3'- -AGCGCGCUAAGG----------UGCGU--GCA--UACG-GG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home