miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20876 5' -64.8 NC_004689.1 + 21678 0.66 0.337642
Target:  5'- aGgGACCGuGGCAGGCgGuGCcgGAGGUCc -3'
miRNA:   3'- cCgCUGGCcCCGUCCGgU-CG--CUCCGG- -5'
20876 5' -64.8 NC_004689.1 + 22948 0.67 0.287421
Target:  5'- cGGCGugguugcACCGGGaCGGGCU-GCGAcgaacguguucGGCCa -3'
miRNA:   3'- -CCGC-------UGGCCCcGUCCGGuCGCU-----------CCGG- -5'
20876 5' -64.8 NC_004689.1 + 54769 0.68 0.262429
Target:  5'- gGGCGuugGCuCGGGGCAgauGGCCgaccAGaCG-GGCCa -3'
miRNA:   3'- -CCGC---UG-GCCCCGU---CCGG----UC-GCuCCGG- -5'
20876 5' -64.8 NC_004689.1 + 51933 0.68 0.24443
Target:  5'- cGGCuGAUCGGGGuCGGuGUCcuuGGCGAucuuGGCCu -3'
miRNA:   3'- -CCG-CUGGCCCC-GUC-CGG---UCGCU----CCGG- -5'
20876 5' -64.8 NC_004689.1 + 11134 0.69 0.201418
Target:  5'- cGCG-UCGGGGUuGGCCGG-GGGaGCCg -3'
miRNA:   3'- cCGCuGGCCCCGuCCGGUCgCUC-CGG- -5'
20876 5' -64.8 NC_004689.1 + 37006 0.7 0.187064
Target:  5'- cGUGACCGGcuuGGCAGcCCAGCGc-GCCa -3'
miRNA:   3'- cCGCUGGCC---CCGUCcGGUCGCucCGG- -5'
20876 5' -64.8 NC_004689.1 + 11095 0.74 0.091419
Target:  5'- gGGcCGACCGGGaGCc-GCUGGCGGGGUCu -3'
miRNA:   3'- -CC-GCUGGCCC-CGucCGGUCGCUCCGG- -5'
20876 5' -64.8 NC_004689.1 + 21726 0.74 0.089052
Target:  5'- cGGCGGuugCGGGGCAGGCguGuUGGGaGCCg -3'
miRNA:   3'- -CCGCUg--GCCCCGUCCGguC-GCUC-CGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.