Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20876 | 5' | -64.8 | NC_004689.1 | + | 21678 | 0.66 | 0.337642 |
Target: 5'- aGgGACCGuGGCAGGCgGuGCcgGAGGUCc -3' miRNA: 3'- cCgCUGGCcCCGUCCGgU-CG--CUCCGG- -5' |
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20876 | 5' | -64.8 | NC_004689.1 | + | 22948 | 0.67 | 0.287421 |
Target: 5'- cGGCGugguugcACCGGGaCGGGCU-GCGAcgaacguguucGGCCa -3' miRNA: 3'- -CCGC-------UGGCCCcGUCCGGuCGCU-----------CCGG- -5' |
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20876 | 5' | -64.8 | NC_004689.1 | + | 54769 | 0.68 | 0.262429 |
Target: 5'- gGGCGuugGCuCGGGGCAgauGGCCgaccAGaCG-GGCCa -3' miRNA: 3'- -CCGC---UG-GCCCCGU---CCGG----UC-GCuCCGG- -5' |
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20876 | 5' | -64.8 | NC_004689.1 | + | 51933 | 0.68 | 0.24443 |
Target: 5'- cGGCuGAUCGGGGuCGGuGUCcuuGGCGAucuuGGCCu -3' miRNA: 3'- -CCG-CUGGCCCC-GUC-CGG---UCGCU----CCGG- -5' |
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20876 | 5' | -64.8 | NC_004689.1 | + | 11134 | 0.69 | 0.201418 |
Target: 5'- cGCG-UCGGGGUuGGCCGG-GGGaGCCg -3' miRNA: 3'- cCGCuGGCCCCGuCCGGUCgCUC-CGG- -5' |
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20876 | 5' | -64.8 | NC_004689.1 | + | 37006 | 0.7 | 0.187064 |
Target: 5'- cGUGACCGGcuuGGCAGcCCAGCGc-GCCa -3' miRNA: 3'- cCGCUGGCC---CCGUCcGGUCGCucCGG- -5' |
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20876 | 5' | -64.8 | NC_004689.1 | + | 11095 | 0.74 | 0.091419 |
Target: 5'- gGGcCGACCGGGaGCc-GCUGGCGGGGUCu -3' miRNA: 3'- -CC-GCUGGCCC-CGucCGGUCGCUCCGG- -5' |
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20876 | 5' | -64.8 | NC_004689.1 | + | 21726 | 0.74 | 0.089052 |
Target: 5'- cGGCGGuugCGGGGCAGGCguGuUGGGaGCCg -3' miRNA: 3'- -CCGCUg--GCCCCGUCCGguC-GCUC-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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