miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20879 5' -50.7 NC_004689.1 + 43698 0.66 0.958186
Target:  5'- cGCGCuaGCUCACcacuuCACAGCG-CCGu -3'
miRNA:   3'- -CGUG--UGGGUGuuaauGUGUCGCuGGC- -5'
20879 5' -50.7 NC_004689.1 + 60313 0.66 0.958186
Target:  5'- -aACGugaCCACGAUgcgGCACAuguugcGCGACCGc -3'
miRNA:   3'- cgUGUg--GGUGUUAa--UGUGU------CGCUGGC- -5'
20879 5' -50.7 NC_004689.1 + 64840 0.66 0.954032
Target:  5'- aCACGCCCACGggUGCcuccACAGUG-CgGg -3'
miRNA:   3'- cGUGUGGGUGUuaAUG----UGUCGCuGgC- -5'
20879 5' -50.7 NC_004689.1 + 5136 0.66 0.949608
Target:  5'- cGCGauCAUCC-CAGUUGCcCAGCGuCCa -3'
miRNA:   3'- -CGU--GUGGGuGUUAAUGuGUCGCuGGc -5'
20879 5' -50.7 NC_004689.1 + 64003 0.66 0.949608
Target:  5'- cGCGCACCCu--GUUccACGCAGUaGGCgCGa -3'
miRNA:   3'- -CGUGUGGGuguUAA--UGUGUCG-CUG-GC- -5'
20879 5' -50.7 NC_004689.1 + 23839 0.67 0.929134
Target:  5'- -uGCGCCUGCGAUU--GCAGCG-CCa -3'
miRNA:   3'- cgUGUGGGUGUUAAugUGUCGCuGGc -5'
20879 5' -50.7 NC_004689.1 + 20844 0.67 0.923311
Target:  5'- cCACcgucaCCGgAGUUGCGCAGCGuguCCGa -3'
miRNA:   3'- cGUGug---GGUgUUAAUGUGUCGCu--GGC- -5'
20879 5' -50.7 NC_004689.1 + 21695 0.67 0.923311
Target:  5'- gGUGC-CCCAgGc-UGCACAGgGACCGu -3'
miRNA:   3'- -CGUGuGGGUgUuaAUGUGUCgCUGGC- -5'
20879 5' -50.7 NC_004689.1 + 23919 0.67 0.917204
Target:  5'- -gGCAgCCugAAUUGCAgagcCAGCG-CCGa -3'
miRNA:   3'- cgUGUgGGugUUAAUGU----GUCGCuGGC- -5'
20879 5' -50.7 NC_004689.1 + 35981 0.68 0.910814
Target:  5'- aGCcCACgCGCGAUgucUugAGCGACCa -3'
miRNA:   3'- -CGuGUGgGUGUUAau-GugUCGCUGGc -5'
20879 5' -50.7 NC_004689.1 + 5468 0.68 0.889978
Target:  5'- gGCAauuUCCACGAUcUGCAUAG-GACCGa -3'
miRNA:   3'- -CGUgu-GGGUGUUA-AUGUGUCgCUGGC- -5'
20879 5' -50.7 NC_004689.1 + 11780 0.68 0.88249
Target:  5'- uGUACGaauucgCCGCGAUUACGCuGCGGCg- -3'
miRNA:   3'- -CGUGUg-----GGUGUUAAUGUGuCGCUGgc -5'
20879 5' -50.7 NC_004689.1 + 14218 0.68 0.88249
Target:  5'- gGCACGCUCauGCAAacgaACAguGCGGCUGg -3'
miRNA:   3'- -CGUGUGGG--UGUUaa--UGUguCGCUGGC- -5'
20879 5' -50.7 NC_004689.1 + 23951 0.69 0.874737
Target:  5'- aGCACGgCCugAAUcauCGCGGCcaccuGACCGg -3'
miRNA:   3'- -CGUGUgGGugUUAau-GUGUCG-----CUGGC- -5'
20879 5' -50.7 NC_004689.1 + 20877 0.69 0.858468
Target:  5'- cGCAUGCgCUGCAAUUcgGCAGCGGCUu -3'
miRNA:   3'- -CGUGUG-GGUGUUAAugUGUCGCUGGc -5'
20879 5' -50.7 NC_004689.1 + 7198 0.69 0.858468
Target:  5'- -uGCGCCUuacGCAAUgcUGCGCGGCGcuugGCCGu -3'
miRNA:   3'- cgUGUGGG---UGUUA--AUGUGUCGC----UGGC- -5'
20879 5' -50.7 NC_004689.1 + 40562 0.69 0.84123
Target:  5'- aGCGCGCCUcCGAUUGCGCcacCGAUCa -3'
miRNA:   3'- -CGUGUGGGuGUUAAUGUGuc-GCUGGc -5'
20879 5' -50.7 NC_004689.1 + 25115 0.7 0.832268
Target:  5'- uCGCugCCAUggUcaccgugagguuUGCGCGGUGAUCGa -3'
miRNA:   3'- cGUGugGGUGuuA------------AUGUGUCGCUGGC- -5'
20879 5' -50.7 NC_004689.1 + 33755 0.7 0.804129
Target:  5'- aGCAggaaGCCgACGAUg--ACAGCGACCGc -3'
miRNA:   3'- -CGUg---UGGgUGUUAaugUGUCGCUGGC- -5'
20879 5' -50.7 NC_004689.1 + 41913 0.7 0.794366
Target:  5'- gGCACGgCCACcuu--CGCAGCGGCUu -3'
miRNA:   3'- -CGUGUgGGUGuuaauGUGUCGCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.