Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20885 | 5' | -56.1 | NC_004689.1 | + | 48728 | 0.67 | 0.70742 |
Target: 5'- gGCGUGUUGUUgaaguCGGGCcggAGGUacaGGACCg -3' miRNA: 3'- -UGCGCAACAGu----GUCCG---UCCGc--UCUGG- -5' |
|||||||
20885 | 5' | -56.1 | NC_004689.1 | + | 15180 | 0.68 | 0.589832 |
Target: 5'- uACGUcccaUCACAGGCAGGaauGGACCa -3' miRNA: 3'- -UGCGcaacAGUGUCCGUCCgc-UCUGG- -5' |
|||||||
20885 | 5' | -56.1 | NC_004689.1 | + | 53727 | 0.69 | 0.568549 |
Target: 5'- aACGCGccGUCACugaguGuGCAGGCGuuGAUCg -3' miRNA: 3'- -UGCGCaaCAGUGu----C-CGUCCGCu-CUGG- -5' |
|||||||
20885 | 5' | -56.1 | NC_004689.1 | + | 12470 | 0.69 | 0.547463 |
Target: 5'- aACGUGUUGuUCGCgaAGGgAGGCG-GugCa -3' miRNA: 3'- -UGCGCAAC-AGUG--UCCgUCCGCuCugG- -5' |
|||||||
20885 | 5' | -56.1 | NC_004689.1 | + | 41308 | 0.7 | 0.485923 |
Target: 5'- aACGUGUUGUCGCAGaCGGucGCGGuGAUCg -3' miRNA: 3'- -UGCGCAACAGUGUCcGUC--CGCU-CUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home