miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20887 5' -58.1 NC_004689.1 + 6604 0.66 0.654315
Target:  5'- aCCGGCCACccaGAgcaGGGUgauaccgaagACCaGGCCGAGa -3'
miRNA:   3'- aGGCUGGUG---CU---UCCG----------UGG-CCGGUUCa -5'
20887 5' -58.1 NC_004689.1 + 3440 0.66 0.616096
Target:  5'- aCCGACCGgucucgguguacacgUGAGGGUugCG-CCAGGa -3'
miRNA:   3'- aGGCUGGU---------------GCUUCCGugGCcGGUUCa -5'
20887 5' -58.1 NC_004689.1 + 29614 0.66 0.611852
Target:  5'- -aCGGCgACGAGugacGGUACCGGUCGAa- -3'
miRNA:   3'- agGCUGgUGCUU----CCGUGGCCGGUUca -5'
20887 5' -58.1 NC_004689.1 + 11093 0.67 0.590685
Target:  5'- gCCGACCG-GGAGcCGCUGGCgGGGUc -3'
miRNA:   3'- aGGCUGGUgCUUCcGUGGCCGgUUCA- -5'
20887 5' -58.1 NC_004689.1 + 32765 0.67 0.580146
Target:  5'- -aCGAgCAcCGGAGGCACCGucguGUCAGGg -3'
miRNA:   3'- agGCUgGU-GCUUCCGUGGC----CGGUUCa -5'
20887 5' -58.1 NC_004689.1 + 58375 0.68 0.528193
Target:  5'- --gGAUCGCGAAGuGCcucacgcauuCCGGCCAAGg -3'
miRNA:   3'- aggCUGGUGCUUC-CGu---------GGCCGGUUCa -5'
20887 5' -58.1 NC_004689.1 + 11140 0.69 0.458669
Target:  5'- cUUGGCCGCGucGGgGuuGGCCGGGg -3'
miRNA:   3'- aGGCUGGUGCuuCCgUggCCGGUUCa -5'
20887 5' -58.1 NC_004689.1 + 15459 0.69 0.445347
Target:  5'- uUCCGGCCACGAuccuugggcauauGGCACCaGaCCAugaGGUc -3'
miRNA:   3'- -AGGCUGGUGCUu------------CCGUGGcC-GGU---UCA- -5'
20887 5' -58.1 NC_004689.1 + 16103 0.7 0.377047
Target:  5'- uUCCGGCUccgGCGAAGGCGacUCGuCCAGGUa -3'
miRNA:   3'- -AGGCUGG---UGCUUCCGU--GGCcGGUUCA- -5'
20887 5' -58.1 NC_004689.1 + 1940 0.71 0.336126
Target:  5'- aCCgGACCGCG-AGG-ACCGGCCAccuuGGUa -3'
miRNA:   3'- aGG-CUGGUGCuUCCgUGGCCGGU----UCA- -5'
20887 5' -58.1 NC_004689.1 + 12882 0.76 0.158263
Target:  5'- gCCGACCggguuGCGAAGGUcgaACCGGCCAccGGa -3'
miRNA:   3'- aGGCUGG-----UGCUUCCG---UGGCCGGU--UCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.