miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2089 5' -55.2 NC_001348.1 + 27029 0.66 0.882907
Target:  5'- aGACCCAACUUAGAcCUUA--UGGACg -3'
miRNA:   3'- aUUGGGUUGGGUCUcGAGUgcACCUG- -5'
2089 5' -55.2 NC_001348.1 + 95613 0.66 0.882907
Target:  5'- gUAACCugCAugCCGGGGCUCuaGCGgaacguuaUGGGCu -3'
miRNA:   3'- -AUUGG--GUugGGUCUCGAG--UGC--------ACCUG- -5'
2089 5' -55.2 NC_001348.1 + 80963 0.66 0.868013
Target:  5'- gAAUgUAAUCaUAGAGUUCACGUGGGg -3'
miRNA:   3'- aUUGgGUUGG-GUCUCGAGUGCACCUg -5'
2089 5' -55.2 NC_001348.1 + 113922 0.67 0.818132
Target:  5'- aAACCCgGAUCCAG-GC-CAUuGUGGACa -3'
miRNA:   3'- aUUGGG-UUGGGUCuCGaGUG-CACCUG- -5'
2089 5' -55.2 NC_001348.1 + 121534 0.67 0.818132
Target:  5'- -cGCCCAaggaaacaugauGCCCGGGGUauaacaccUCGCGUcccuGGACg -3'
miRNA:   3'- auUGGGU------------UGGGUCUCG--------AGUGCA----CCUG- -5'
2089 5' -55.2 NC_001348.1 + 108258 0.67 0.818132
Target:  5'- -cGCCCAaggaaacaugauGCCCGGGGUauaacaccUCGCGUcccuGGACg -3'
miRNA:   3'- auUGGGU------------UGGGUCUCG--------AGUGCA----CCUG- -5'
2089 5' -55.2 NC_001348.1 + 50985 0.68 0.761801
Target:  5'- aAACgUAACCCAgGGGC-CcCGUGGGCa -3'
miRNA:   3'- aUUGgGUUGGGU-CUCGaGuGCACCUG- -5'
2089 5' -55.2 NC_001348.1 + 9671 0.69 0.731849
Target:  5'- -cACCCAGCgaaCGGGGaaCGCGUGGAUu -3'
miRNA:   3'- auUGGGUUGg--GUCUCgaGUGCACCUG- -5'
2089 5' -55.2 NC_001348.1 + 110755 0.69 0.721667
Target:  5'- --uCCCAACCCGGAGUacaaaaCGCGccgGGGCc -3'
miRNA:   3'- auuGGGUUGGGUCUCGa-----GUGCa--CCUG- -5'
2089 5' -55.2 NC_001348.1 + 119037 0.69 0.721667
Target:  5'- --uCCCAACCCGGAGUacaaaaCGCGccgGGGCc -3'
miRNA:   3'- auuGGGUUGGGUCUCGa-----GUGCa--CCUG- -5'
2089 5' -55.2 NC_001348.1 + 74799 1.07 0.003247
Target:  5'- cUAACCCAACCCAGAGCUCACGUGGACc -3'
miRNA:   3'- -AUUGGGUUGGGUCUCGAGUGCACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.