Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2089 | 5' | -55.2 | NC_001348.1 | + | 74799 | 1.07 | 0.003247 |
Target: 5'- cUAACCCAACCCAGAGCUCACGUGGACc -3' miRNA: 3'- -AUUGGGUUGGGUCUCGAGUGCACCUG- -5' |
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2089 | 5' | -55.2 | NC_001348.1 | + | 119037 | 0.69 | 0.721667 |
Target: 5'- --uCCCAACCCGGAGUacaaaaCGCGccgGGGCc -3' miRNA: 3'- auuGGGUUGGGUCUCGa-----GUGCa--CCUG- -5' |
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2089 | 5' | -55.2 | NC_001348.1 | + | 113922 | 0.67 | 0.818132 |
Target: 5'- aAACCCgGAUCCAG-GC-CAUuGUGGACa -3' miRNA: 3'- aUUGGG-UUGGGUCuCGaGUG-CACCUG- -5' |
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2089 | 5' | -55.2 | NC_001348.1 | + | 121534 | 0.67 | 0.818132 |
Target: 5'- -cGCCCAaggaaacaugauGCCCGGGGUauaacaccUCGCGUcccuGGACg -3' miRNA: 3'- auUGGGU------------UGGGUCUCG--------AGUGCA----CCUG- -5' |
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2089 | 5' | -55.2 | NC_001348.1 | + | 80963 | 0.66 | 0.868013 |
Target: 5'- gAAUgUAAUCaUAGAGUUCACGUGGGg -3' miRNA: 3'- aUUGgGUUGG-GUCUCGAGUGCACCUg -5' |
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2089 | 5' | -55.2 | NC_001348.1 | + | 9671 | 0.69 | 0.731849 |
Target: 5'- -cACCCAGCgaaCGGGGaaCGCGUGGAUu -3' miRNA: 3'- auUGGGUUGg--GUCUCgaGUGCACCUG- -5' |
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2089 | 5' | -55.2 | NC_001348.1 | + | 50985 | 0.68 | 0.761801 |
Target: 5'- aAACgUAACCCAgGGGC-CcCGUGGGCa -3' miRNA: 3'- aUUGgGUUGGGU-CUCGaGuGCACCUG- -5' |
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2089 | 5' | -55.2 | NC_001348.1 | + | 108258 | 0.67 | 0.818132 |
Target: 5'- -cGCCCAaggaaacaugauGCCCGGGGUauaacaccUCGCGUcccuGGACg -3' miRNA: 3'- auUGGGU------------UGGGUCUCG--------AGUGCA----CCUG- -5' |
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2089 | 5' | -55.2 | NC_001348.1 | + | 95613 | 0.66 | 0.882907 |
Target: 5'- gUAACCugCAugCCGGGGCUCuaGCGgaacguuaUGGGCu -3' miRNA: 3'- -AUUGG--GUugGGUCUCGAG--UGC--------ACCUG- -5' |
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2089 | 5' | -55.2 | NC_001348.1 | + | 27029 | 0.66 | 0.882907 |
Target: 5'- aGACCCAACUUAGAcCUUA--UGGACg -3' miRNA: 3'- aUUGGGUUGGGUCUcGAGUgcACCUG- -5' |
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2089 | 5' | -55.2 | NC_001348.1 | + | 110755 | 0.69 | 0.721667 |
Target: 5'- --uCCCAACCCGGAGUacaaaaCGCGccgGGGCc -3' miRNA: 3'- auuGGGUUGGGUCUCGa-----GUGCa--CCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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