Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 209 | 5' | -62.7 | AC_000007.1 | + | 3850 | 0.8 | 0.020033 |
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Target: 5'- gCgGGCGGUGGCuGCAGCGGCugaAGCGGCg -3' miRNA: 3'- -GgCCGCCGUCGcCGUCGCCG---UCGUUG- -5' |
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| 209 | 5' | -62.7 | AC_000007.1 | + | 33287 | 0.81 | 0.018345 |
|
Target: 5'- -aGGaCGG-AGCGGCGGCGGCAGCAGu -3' miRNA: 3'- ggCC-GCCgUCGCCGUCGCCGUCGUUg -5' |
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| 209 | 5' | -62.7 | AC_000007.1 | + | 9387 | 0.81 | 0.017814 |
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Target: 5'- uCUGGCGGCGGUGGgGGaggggggacaCGGCGGCGACg -3' miRNA: 3'- -GGCCGCCGUCGCCgUC----------GCCGUCGUUG- -5' |
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| 209 | 5' | -62.7 | AC_000007.1 | + | 2163 | 0.83 | 0.011458 |
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Target: 5'- -aGGaagccaGGCGGCGGCGGCGGCAGgAGCa -3' miRNA: 3'- ggCCg-----CCGUCGCCGUCGCCGUCgUUG- -5' |
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| 209 | 5' | -62.7 | AC_000007.1 | + | 16243 | 0.84 | 0.009321 |
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Target: 5'- -gGGCGGCAGUgccgggucGGCGGCGGUGGCGACg -3' miRNA: 3'- ggCCGCCGUCG--------CCGUCGCCGUCGUUG- -5' |
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| 209 | 5' | -62.7 | AC_000007.1 | + | 26287 | 0.86 | 0.006351 |
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Target: 5'- gUGGCGGCGGCGGCAGCuGCAGCuuCu -3' miRNA: 3'- gGCCGCCGUCGCCGUCGcCGUCGuuG- -5' |
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| 209 | 5' | -62.7 | AC_000007.1 | + | 26738 | 1.11 | 0.000064 |
|
Target: 5'- aCCGGCGGCAGCGGCAGCGGCAGCAACa -3' miRNA: 3'- -GGCCGCCGUCGCCGUCGCCGUCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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