miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
209 5' -62.7 AC_000007.1 + 16388 0.71 0.106733
Target:  5'- aUGGCcGCGGCuGCuGCGGCGGCcGCu -3'
miRNA:   3'- gGCCGcCGUCGcCGuCGCCGUCGuUG- -5'
209 5' -62.7 AC_000007.1 + 12316 0.71 0.106733
Target:  5'- cCCGGCGGUgcgGGCGGC-GCuGCAGagcCAGCc -3'
miRNA:   3'- -GGCCGCCG---UCGCCGuCGcCGUC---GUUG- -5'
209 5' -62.7 AC_000007.1 + 12180 0.71 0.109761
Target:  5'- -gGGCuGGCGGUGGCAcccGCGcGCgcuGGCAACg -3'
miRNA:   3'- ggCCG-CCGUCGCCGU---CGC-CG---UCGUUG- -5'
209 5' -62.7 AC_000007.1 + 26507 0.7 0.112868
Target:  5'- gCCGGCGGCgccugaggAGCGGaGGuuGUAGCGAUg -3'
miRNA:   3'- -GGCCGCCG--------UCGCCgUCgcCGUCGUUG- -5'
209 5' -62.7 AC_000007.1 + 26832 0.7 0.119332
Target:  5'- gCGGCGGCAGCaGCAGgaGG-AGgAGCg -3'
miRNA:   3'- gGCCGCCGUCGcCGUCg-CCgUCgUUG- -5'
209 5' -62.7 AC_000007.1 + 26233 0.7 0.126139
Target:  5'- gCCcGCGGCuGCugauagGGCuGCGGCGGCGGg -3'
miRNA:   3'- -GGcCGCCGuCG------CCGuCGCCGUCGUUg -5'
209 5' -62.7 AC_000007.1 + 13849 0.7 0.126139
Target:  5'- gCCGGaGGCAgguucuuuucgcGCuGCGGCuGCAGCAGCg -3'
miRNA:   3'- -GGCCgCCGU------------CGcCGUCGcCGUCGUUG- -5'
209 5' -62.7 AC_000007.1 + 17653 0.7 0.129675
Target:  5'- -gGGUGGUAGCGcGCuGuUGGCAGCAc- -3'
miRNA:   3'- ggCCGCCGUCGC-CGuC-GCCGUCGUug -5'
209 5' -62.7 AC_000007.1 + 17332 0.69 0.146348
Target:  5'- gCGGCcGCAGCGGCcgccugcaccGCGGCaucugccaccgccgaGGCAACc -3'
miRNA:   3'- gGCCGcCGUCGCCGu---------CGCCG---------------UCGUUG- -5'
209 5' -62.7 AC_000007.1 + 15173 0.69 0.148362
Target:  5'- aCgGGCGGaggagaAGCgcgcugaggccgaGGCAGCGGCAGaAGCu -3'
miRNA:   3'- -GgCCGCCg-----UCG-------------CCGUCGCCGUCgUUG- -5'
209 5' -62.7 AC_000007.1 + 16496 0.69 0.152882
Target:  5'- ------cCAGCGGCGGCGGCGcGCAACg -3'
miRNA:   3'- ggccgccGUCGCCGUCGCCGU-CGUUG- -5'
209 5' -62.7 AC_000007.1 + 18665 0.69 0.152882
Target:  5'- gCUGGCGGCA-CGGCGcagggacgcGCGGCuagGGCGGg -3'
miRNA:   3'- -GGCCGCCGUcGCCGU---------CGCCG---UCGUUg -5'
209 5' -62.7 AC_000007.1 + 16124 0.68 0.16142
Target:  5'- aCUGGUGGCGGCGugGGCGuGUAGUuGCg -3'
miRNA:   3'- -GGCCGCCGUCGCcgUCGC-CGUCGuUG- -5'
209 5' -62.7 AC_000007.1 + 16316 0.68 0.165849
Target:  5'- uCCaGGCGaCgAGCGGCcGCcGCAGCAGCc -3'
miRNA:   3'- -GG-CCGCcG-UCGCCGuCGcCGUCGUUG- -5'
209 5' -62.7 AC_000007.1 + 12668 0.68 0.165849
Target:  5'- gUGGC-GCAGCGugaGC-GCGcGCAGCAGCa -3'
miRNA:   3'- gGCCGcCGUCGC---CGuCGC-CGUCGUUG- -5'
209 5' -62.7 AC_000007.1 + 10852 0.68 0.165849
Target:  5'- gCGcGCGGcCAGUGGCcaaaaaagcuAGCG-CAGCAGCc -3'
miRNA:   3'- gGC-CGCC-GUCGCCG----------UCGCcGUCGUUG- -5'
209 5' -62.7 AC_000007.1 + 18619 0.68 0.174564
Target:  5'- aCGGCGGaCGGCccuGGCAGCacagguuucugcuGGguGuCAGCg -3'
miRNA:   3'- gGCCGCC-GUCG---CCGUCG-------------CCguC-GUUG- -5'
209 5' -62.7 AC_000007.1 + 34262 0.68 0.179795
Target:  5'- gCGGUGGUGGauguuaucagGGCAGCGGC-GCAu- -3'
miRNA:   3'- gGCCGCCGUCg---------CCGUCGCCGuCGUug -5'
209 5' -62.7 AC_000007.1 + 11133 0.68 0.18467
Target:  5'- -aGG-GGCAacauccGCGGCugacGCGGCGGCAGa -3'
miRNA:   3'- ggCCgCCGU------CGCCGu---CGCCGUCGUUg -5'
209 5' -62.7 AC_000007.1 + 33191 0.67 0.2
Target:  5'- -aGGauagGGCGGUGGU-GCuGCAGCAGCg -3'
miRNA:   3'- ggCCg---CCGUCGCCGuCGcCGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.