miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
209 5' -62.7 AC_000007.1 + 27989 0.66 0.252744
Target:  5'- aCCGGa-GCcGCgGGCAaagcacuuGUGGCGGCGGCa -3'
miRNA:   3'- -GGCCgcCGuCG-CCGU--------CGCCGUCGUUG- -5'
209 5' -62.7 AC_000007.1 + 3850 0.8 0.020033
Target:  5'- gCgGGCGGUGGCuGCAGCGGCugaAGCGGCg -3'
miRNA:   3'- -GgCCGCCGUCGcCGUCGCCG---UCGUUG- -5'
209 5' -62.7 AC_000007.1 + 33287 0.81 0.018345
Target:  5'- -aGGaCGG-AGCGGCGGCGGCAGCAGu -3'
miRNA:   3'- ggCC-GCCgUCGCCGUCGCCGUCGUUg -5'
209 5' -62.7 AC_000007.1 + 26287 0.86 0.006351
Target:  5'- gUGGCGGCGGCGGCAGCuGCAGCuuCu -3'
miRNA:   3'- gGCCGCCGUCGCCGUCGcCGUCGuuG- -5'
209 5' -62.7 AC_000007.1 + 16124 0.68 0.16142
Target:  5'- aCUGGUGGCGGCGugGGCGuGUAGUuGCg -3'
miRNA:   3'- -GGCCGCCGUCGCcgUCGC-CGUCGuUG- -5'
209 5' -62.7 AC_000007.1 + 18665 0.69 0.152882
Target:  5'- gCUGGCGGCA-CGGCGcagggacgcGCGGCuagGGCGGg -3'
miRNA:   3'- -GGCCGCCGUcGCCGU---------CGCCG---UCGUUg -5'
209 5' -62.7 AC_000007.1 + 17653 0.7 0.129675
Target:  5'- -gGGUGGUAGCGcGCuGuUGGCAGCAc- -3'
miRNA:   3'- ggCCGCCGUCGC-CGuC-GCCGUCGUug -5'
209 5' -62.7 AC_000007.1 + 13849 0.7 0.126139
Target:  5'- gCCGGaGGCAgguucuuuucgcGCuGCGGCuGCAGCAGCg -3'
miRNA:   3'- -GGCCgCCGU------------CGcCGUCGcCGUCGUUG- -5'
209 5' -62.7 AC_000007.1 + 16388 0.71 0.106733
Target:  5'- aUGGCcGCGGCuGCuGCGGCGGCcGCu -3'
miRNA:   3'- gGCCGcCGUCGcCGuCGCCGUCGuUG- -5'
209 5' -62.7 AC_000007.1 + 24195 0.74 0.062254
Target:  5'- uUGGCGGCAuCGGUggaGGCGGUGGUGGCg -3'
miRNA:   3'- gGCCGCCGUcGCCG---UCGCCGUCGUUG- -5'
209 5' -62.7 AC_000007.1 + 26507 0.7 0.112868
Target:  5'- gCCGGCGGCgccugaggAGCGGaGGuuGUAGCGAUg -3'
miRNA:   3'- -GGCCGCCG--------UCGCCgUCgcCGUCGUUG- -5'
209 5' -62.7 AC_000007.1 + 34262 0.68 0.179795
Target:  5'- gCGGUGGUGGauguuaucagGGCAGCGGC-GCAu- -3'
miRNA:   3'- gGCCGCCGUCg---------CCGUCGCCGuCGUug -5'
209 5' -62.7 AC_000007.1 + 15277 0.74 0.057113
Target:  5'- cUCGGguUGcGCAGCGGgGGCGGCAGCuuCu -3'
miRNA:   3'- -GGCC--GC-CGUCGCCgUCGCCGUCGuuG- -5'
209 5' -62.7 AC_000007.1 + 18619 0.68 0.174564
Target:  5'- aCGGCGGaCGGCccuGGCAGCacagguuucugcuGGguGuCAGCg -3'
miRNA:   3'- gGCCGCC-GUCG---CCGUCG-------------CCguC-GUUG- -5'
209 5' -62.7 AC_000007.1 + 26233 0.7 0.126139
Target:  5'- gCCcGCGGCuGCugauagGGCuGCGGCGGCGGg -3'
miRNA:   3'- -GGcCGCCGuCG------CCGuCGCCGUCGUUg -5'
209 5' -62.7 AC_000007.1 + 17558 0.78 0.030177
Target:  5'- aCGGCGGCGGCGGguucCAGUGGUGGUucGGCg -3'
miRNA:   3'- gGCCGCCGUCGCC----GUCGCCGUCG--UUG- -5'
209 5' -62.7 AC_000007.1 + 16243 0.84 0.009321
Target:  5'- -gGGCGGCAGUgccgggucGGCGGCGGUGGCGACg -3'
miRNA:   3'- ggCCGCCGUCG--------CCGUCGCCGUCGUUG- -5'
209 5' -62.7 AC_000007.1 + 10852 0.68 0.165849
Target:  5'- gCGcGCGGcCAGUGGCcaaaaaagcuAGCG-CAGCAGCc -3'
miRNA:   3'- gGC-CGCC-GUCGCCG----------UCGCcGUCGUUG- -5'
209 5' -62.7 AC_000007.1 + 17332 0.69 0.146348
Target:  5'- gCGGCcGCAGCGGCcgccugcaccGCGGCaucugccaccgccgaGGCAACc -3'
miRNA:   3'- gGCCGcCGUCGCCGu---------CGCCG---------------UCGUUG- -5'
209 5' -62.7 AC_000007.1 + 18838 0.72 0.085198
Target:  5'- aCGGCGGCu-CaGCAGCuccucuGGCGGCGACa -3'
miRNA:   3'- gGCCGCCGucGcCGUCG------CCGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.