Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2090 | 3' | -54.7 | NC_001348.1 | + | 107119 | 0.67 | 0.868061 |
Target: 5'- gCCCGUUgccucgGGGUAUGCCAUGcUGg---- -3' miRNA: 3'- -GGGCGAa-----CCCGUGCGGUGC-ACauaaa -5' |
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2090 | 3' | -54.7 | NC_001348.1 | + | 122673 | 0.67 | 0.868061 |
Target: 5'- gCCCGUUgccucgGGGUAUGCCAUGcUGg---- -3' miRNA: 3'- -GGGCGAa-----CCCGUGCGGUGC-ACauaaa -5' |
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2090 | 3' | -54.7 | NC_001348.1 | + | 100136 | 0.67 | 0.860307 |
Target: 5'- uUCCGaUUGGGCACGCgGgcUGUAUUg -3' miRNA: 3'- -GGGCgAACCCGUGCGgUgcACAUAAa -5' |
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2090 | 3' | -54.7 | NC_001348.1 | + | 117565 | 0.68 | 0.827187 |
Target: 5'- aCCGaaccgGGGCaACGCCgaGCGUGUAa-- -3' miRNA: 3'- gGGCgaa--CCCG-UGCGG--UGCACAUaaa -5' |
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2090 | 3' | -54.7 | NC_001348.1 | + | 112227 | 0.68 | 0.827187 |
Target: 5'- aCCGaaccgGGGCaACGCCgaGCGUGUAa-- -3' miRNA: 3'- gGGCgaa--CCCG-UGCGG--UGCACAUaaa -5' |
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2090 | 3' | -54.7 | NC_001348.1 | + | 90151 | 1.07 | 0.003963 |
Target: 5'- cCCCGCUUGGGCACGCCACGUGUAUUUu -3' miRNA: 3'- -GGGCGAACCCGUGCGGUGCACAUAAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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