Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20905 | 5' | -61.3 | NC_004689.1 | + | 22696 | 0.74 | 0.148 |
Target: 5'- cCGGCCuUCaugccagcuucggUGCCgCGAGCCAcuGCGCCUu -3' miRNA: 3'- -GCCGGuAG-------------ACGGgGCUCGGU--UGCGGG- -5' |
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20905 | 5' | -61.3 | NC_004689.1 | + | 7064 | 0.73 | 0.173236 |
Target: 5'- aCGaGCUugAUCUGuCCCCGuGCCAA-GCCCa -3' miRNA: 3'- -GC-CGG--UAGAC-GGGGCuCGGUUgCGGG- -5' |
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20905 | 5' | -61.3 | NC_004689.1 | + | 58693 | 0.71 | 0.228509 |
Target: 5'- aCGGUCcaGUC-GCCCUuacgaGAGCCGggACGCCCg -3' miRNA: 3'- -GCCGG--UAGaCGGGG-----CUCGGU--UGCGGG- -5' |
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20905 | 5' | -61.3 | NC_004689.1 | + | 6030 | 0.71 | 0.245979 |
Target: 5'- uCGGCC-UCUGCCUC-AGCCAACaGCa- -3' miRNA: 3'- -GCCGGuAGACGGGGcUCGGUUG-CGgg -5' |
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20905 | 5' | -61.3 | NC_004689.1 | + | 45545 | 0.7 | 0.264543 |
Target: 5'- uCGGCCAUC-GCCUucacgauuuCGGGCCggUGCUg -3' miRNA: 3'- -GCCGGUAGaCGGG---------GCUCGGuuGCGGg -5' |
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20905 | 5' | -61.3 | NC_004689.1 | + | 50585 | 0.7 | 0.270978 |
Target: 5'- gGGCCAUUUGCUCUGcGUCGucugcgauGCGCUCg -3' miRNA: 3'- gCCGGUAGACGGGGCuCGGU--------UGCGGG- -5' |
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20905 | 5' | -61.3 | NC_004689.1 | + | 23933 | 0.69 | 0.29798 |
Target: 5'- gCGGCCAcCUgaccggcaGCCUgaauugcaGAGCCAGCGCCg -3' miRNA: 3'- -GCCGGUaGA--------CGGGg-------CUCGGUUGCGGg -5' |
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20905 | 5' | -61.3 | NC_004689.1 | + | 20355 | 0.69 | 0.321792 |
Target: 5'- cCGGCgAUacCUGCCUugguuccccacgcggCGAgcuugucGCCAACGCCCa -3' miRNA: 3'- -GCCGgUA--GACGGG---------------GCU-------CGGUUGCGGG- -5' |
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20905 | 5' | -61.3 | NC_004689.1 | + | 37241 | 0.67 | 0.407615 |
Target: 5'- cCGGCgCAUCcgUGCUggucagcagcgauUCGAGCuUGACGCCCa -3' miRNA: 3'- -GCCG-GUAG--ACGG-------------GGCUCG-GUUGCGGG- -5' |
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20905 | 5' | -61.3 | NC_004689.1 | + | 11458 | 0.67 | 0.408491 |
Target: 5'- uGGCCugc-GCCaCCGAGaaCCGccGCGCCCu -3' miRNA: 3'- gCCGGuagaCGG-GGCUC--GGU--UGCGGG- -5' |
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20905 | 5' | -61.3 | NC_004689.1 | + | 22637 | 0.67 | 0.426241 |
Target: 5'- aCGGCCcg-UGCCCUGAugaaccacGCCGAuUGCCUg -3' miRNA: 3'- -GCCGGuagACGGGGCU--------CGGUU-GCGGG- -5' |
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20905 | 5' | -61.3 | NC_004689.1 | + | 48865 | 0.67 | 0.435286 |
Target: 5'- gCGGCCAUCcgcugagccUGCUCCGcGC--ACGCUCu -3' miRNA: 3'- -GCCGGUAG---------ACGGGGCuCGguUGCGGG- -5' |
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20905 | 5' | -61.3 | NC_004689.1 | + | 478 | 0.66 | 0.450914 |
Target: 5'- gGGCCGUCcgguuUGCCCaUGAGCgCGuucggugcuucuacACGCUCu -3' miRNA: 3'- gCCGGUAG-----ACGGG-GCUCG-GU--------------UGCGGG- -5' |
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20905 | 5' | -61.3 | NC_004689.1 | + | 16036 | 0.66 | 0.453704 |
Target: 5'- uCGGCCAcuUCcugcgaaagcgUGUUCCGcuuGCCGuCGCCCa -3' miRNA: 3'- -GCCGGU--AG-----------ACGGGGCu--CGGUuGCGGG- -5' |
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20905 | 5' | -61.3 | NC_004689.1 | + | 13934 | 0.66 | 0.469687 |
Target: 5'- cCGGcCCGUC-GUUCUGAGCCugcaagcggcgucguCGCCCu -3' miRNA: 3'- -GCC-GGUAGaCGGGGCUCGGuu-------------GCGGG- -5' |
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20905 | 5' | -61.3 | NC_004689.1 | + | 68561 | 0.66 | 0.479221 |
Target: 5'- uGGUCGUCggugGaCCCGcacucuaggucgguGGCCGguACGCCCu -3' miRNA: 3'- gCCGGUAGa---CgGGGC--------------UCGGU--UGCGGG- -5' |
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20905 | 5' | -61.3 | NC_004689.1 | + | 53193 | 0.66 | 0.4821 |
Target: 5'- aGGCa----GCCCCGccAGCCGACGaUCCa -3' miRNA: 3'- gCCGguagaCGGGGC--UCGGUUGC-GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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