Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20906 | 5' | -52.2 | NC_004689.1 | + | 57709 | 0.74 | 0.503087 |
Target: 5'- gGGGAUGUCCuGCCACGGCAGguUGUc-- -3' miRNA: 3'- -CCUUGCAGGuUGGUGCCGUU--GCAcuu -5' |
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20906 | 5' | -52.2 | NC_004689.1 | + | 53037 | 0.67 | 0.856668 |
Target: 5'- cGGcccAGCGgCCAAUCGCGGUGAUGUGc- -3' miRNA: 3'- -CC---UUGCaGGUUGGUGCCGUUGCACuu -5' |
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20906 | 5' | -52.2 | NC_004689.1 | + | 41273 | 0.66 | 0.902352 |
Target: 5'- ----aGUCCAGCUuguCGGCAACGUu-- -3' miRNA: 3'- ccuugCAGGUUGGu--GCCGUUGCAcuu -5' |
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20906 | 5' | -52.2 | NC_004689.1 | + | 23245 | 0.67 | 0.872917 |
Target: 5'- ----gGUCCcACCA-GGCAACGUGGc -3' miRNA: 3'- ccuugCAGGuUGGUgCCGUUGCACUu -5' |
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20906 | 5' | -52.2 | NC_004689.1 | + | 19621 | 0.75 | 0.422997 |
Target: 5'- aGGAAguCGgugCCGACCACGGCAAUGUc-- -3' miRNA: 3'- -CCUU--GCa--GGUUGGUGCCGUUGCAcuu -5' |
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20906 | 5' | -52.2 | NC_004689.1 | + | 10890 | 0.66 | 0.909041 |
Target: 5'- -uGGCGUCguGCCACuGGUAguccuuguGCGUGAGa -3' miRNA: 3'- ccUUGCAGguUGGUG-CCGU--------UGCACUU- -5' |
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20906 | 5' | -52.2 | NC_004689.1 | + | 7449 | 0.67 | 0.888161 |
Target: 5'- uGGGAUGaCCGAagACGGCGACGgUGGc -3' miRNA: 3'- -CCUUGCaGGUUggUGCCGUUGC-ACUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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