miRNA display CGI

Results 1 - 11 of 11 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
2091	3'	-40.8	NC_001348.1	+	74545	0.66	1
	Target:  5'- gACAUGCAAacaGAGGGUU---GACCGg -3' miRNA:   3'- -UGUACGUUcuaUUCCUAAuauUUGGU- -5'
2091	3'	-40.8	NC_001348.1	+	112598	0.69	1
	Target:  5'- uACAUGCAAGAUucuaGAUUAUucAUCAa -3' miRNA:   3'- -UGUACGUUCUAuuc-CUAAUAuuUGGU- -5'
2091	3'	-40.8	NC_001348.1	+	57718	0.68	1
	Target:  5'- uUAUGCAauGGAUcguuuucaccaguuuGAGGGUUAUAGACa- -3' miRNA:   3'- uGUACGU--UCUA---------------UUCCUAAUAUUUGgu -5'
2091	3'	-40.8	NC_001348.1	+	51977	0.66	1
	Target:  5'- -gGUGgAGGAUAgcGGGAUgaccgAAGCCAa -3' miRNA:   3'- ugUACgUUCUAU--UCCUAaua--UUUGGU- -5'
2091	3'	-40.8	NC_001348.1	+	116976	0.67	1
	Target:  5'- gACAUGUAGGAUcgauGGGGAcauacAACCAc -3' miRNA:   3'- -UGUACGUUCUA----UUCCUaauauUUGGU- -5'
2091	3'	-40.8	NC_001348.1	+	41162	0.67	1
	Target:  5'- aACAUGCAuuuucaauuGGGUGAGGAUccauAugCAg -3' miRNA:   3'- -UGUACGU---------UCUAUUCCUAauauUugGU- -5'
2091	3'	-40.8	NC_001348.1	+	101744	0.69	0.999999
	Target:  5'- cCAUGCAAGAUuuGGAUguaguauuUAUAcACCc -3' miRNA:   3'- uGUACGUUCUAuuCCUA--------AUAUuUGGu -5'
2091	3'	-40.8	NC_001348.1	+	92638	0.72	0.999904
	Target:  5'- cCAUGUggGuu-GGGAUUAcGAACCAu -3' miRNA:   3'- uGUACGuuCuauUCCUAAUaUUUGGU- -5'
2091	3'	-40.8	NC_001348.1	+	85540	0.75	0.998505
	Target:  5'- --cUGCAGGGUGGGGAUUuaggguGCCAg -3' miRNA:   3'- uguACGUUCUAUUCCUAAuauu--UGGU- -5'
2091	3'	-40.8	NC_001348.1	+	79462	0.75	0.998165
	Target:  5'- cACAUGUAGGcuuUGGGGAUUGUcAACCc -3' miRNA:   3'- -UGUACGUUCu--AUUCCUAAUAuUUGGu -5'
2091	3'	-40.8	NC_001348.1	+	92450	1.12	0.054128
	Target:  5'- cACAUGCAAGAUAAGGAUUAUAAACCAa -3' miRNA:   3'- -UGUACGUUCUAUUCCUAAUAUUUGGU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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