miRNA: 3'- uAGGGA---CUGCGgaugGCGUUCAAGUg -5'
miRNA: 3'- -UAGGG--------------ACuGCGGa--UGGCGUU--CAAGUG- -5'
miRNA: 3'- -UAGGGACu-----GCgGAUGGCGUU----CAAGUG- -5'
miRNA: 3'- -UAGGGACUGCGG-----------AUGGC-GUUCaaGUG- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 20912 | 5' | -54.8 | NC_004689.1 | + | 14365 | 0.66 | 0.769604 |
|
Target: 5'- uUCCCUugcGAUGCaa--CGCAAGUUCAg -3' miRNA: 3'- uAGGGA---CUGCGgaugGCGUUCAAGUg -5' |
|||||||
| 20912 | 5' | -54.8 | NC_004689.1 | + | 31502 | 0.68 | 0.659784 |
|
Target: 5'- gAUCCCccacacgucugccaUGuCGCCaugGCCGCGAuuGUUCGCa -3' miRNA: 3'- -UAGGG--------------ACuGCGGa--UGGCGUU--CAAGUG- -5' |
|||||||
| 20912 | 5' | -54.8 | NC_004689.1 | + | 30335 | 0.69 | 0.608024 |
|
Target: 5'- gGUUCCUGuuccuuCGgCUGCCGCGAucauGUUCGCc -3' miRNA: 3'- -UAGGGACu-----GCgGAUGGCGUU----CAAGUG- -5' |
|||||||
| 20912 | 5' | -54.8 | NC_004689.1 | + | 8275 | 0.69 | 0.58608 |
|
Target: 5'- cGUUCCUGACGCUugcgcucacggUACCGcCGAGacCGCa -3' miRNA: 3'- -UAGGGACUGCGG-----------AUGGC-GUUCaaGUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home