miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20914 5' -46 NC_004689.1 + 46313 0.66 0.997605
Target:  5'- -cGGGCGCAGU--UCGGAGAAGaAUCg -3'
miRNA:   3'- guUUCGCGUCGucGGUCUUUUUaUAG- -5'
20914 5' -46 NC_004689.1 + 22191 0.66 0.997313
Target:  5'- gGAAGCGCgccuugaagucugcgAGCAGUCGGuccacUGUCg -3'
miRNA:   3'- gUUUCGCG---------------UCGUCGGUCuuuuuAUAG- -5'
20914 5' -46 NC_004689.1 + 13765 0.66 0.997101
Target:  5'- ---uGCGCuGCGGCCucgggguGAcgGGUGUCc -3'
miRNA:   3'- guuuCGCGuCGUCGGu------CUuuUUAUAG- -5'
20914 5' -46 NC_004689.1 + 29471 0.67 0.993092
Target:  5'- --cAGCGCcaccgccGUAGCCGGGucGGGUGUCg -3'
miRNA:   3'- guuUCGCGu------CGUCGGUCUu-UUUAUAG- -5'
20914 5' -46 NC_004689.1 + 7552 0.67 0.99058
Target:  5'- gCGAAGUGCGGCAcGCUGGcguGcgGUCa -3'
miRNA:   3'- -GUUUCGCGUCGU-CGGUCuuuUuaUAG- -5'
20914 5' -46 NC_004689.1 + 12335 0.68 0.989081
Target:  5'- aCGAGGCGCuuguGCGcCCAGAGA---AUCg -3'
miRNA:   3'- -GUUUCGCGu---CGUcGGUCUUUuuaUAG- -5'
20914 5' -46 NC_004689.1 + 1653 0.68 0.987402
Target:  5'- ---uGCGCuucuGGCAGCCAGAGuu---UCg -3'
miRNA:   3'- guuuCGCG----UCGUCGGUCUUuuuauAG- -5'
20914 5' -46 NC_004689.1 + 10537 0.68 0.983453
Target:  5'- gGAGGgGUGGCcguuGCCGGggGAGUGg- -3'
miRNA:   3'- gUUUCgCGUCGu---CGGUCuuUUUAUag -5'
20914 5' -46 NC_004689.1 + 57388 0.7 0.962158
Target:  5'- gAGAGCGUAGCuguaAGCguGAGcGAUGUUg -3'
miRNA:   3'- gUUUCGCGUCG----UCGguCUUuUUAUAG- -5'
20914 5' -46 NC_004689.1 + 46105 0.73 0.875915
Target:  5'- ---cGCGguGC-GCCAGGAAcGAUGUCa -3'
miRNA:   3'- guuuCGCguCGuCGGUCUUU-UUAUAG- -5'
20914 5' -46 NC_004689.1 + 36163 0.75 0.800745
Target:  5'- ---uGCGCAuaaugcGCGGCCAGGAGAAUcauuGUCg -3'
miRNA:   3'- guuuCGCGU------CGUCGGUCUUUUUA----UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.