Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20914 | 5' | -46 | NC_004689.1 | + | 46313 | 0.66 | 0.997605 |
Target: 5'- -cGGGCGCAGU--UCGGAGAAGaAUCg -3' miRNA: 3'- guUUCGCGUCGucGGUCUUUUUaUAG- -5' |
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20914 | 5' | -46 | NC_004689.1 | + | 22191 | 0.66 | 0.997313 |
Target: 5'- gGAAGCGCgccuugaagucugcgAGCAGUCGGuccacUGUCg -3' miRNA: 3'- gUUUCGCG---------------UCGUCGGUCuuuuuAUAG- -5' |
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20914 | 5' | -46 | NC_004689.1 | + | 13765 | 0.66 | 0.997101 |
Target: 5'- ---uGCGCuGCGGCCucgggguGAcgGGUGUCc -3' miRNA: 3'- guuuCGCGuCGUCGGu------CUuuUUAUAG- -5' |
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20914 | 5' | -46 | NC_004689.1 | + | 29471 | 0.67 | 0.993092 |
Target: 5'- --cAGCGCcaccgccGUAGCCGGGucGGGUGUCg -3' miRNA: 3'- guuUCGCGu------CGUCGGUCUu-UUUAUAG- -5' |
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20914 | 5' | -46 | NC_004689.1 | + | 7552 | 0.67 | 0.99058 |
Target: 5'- gCGAAGUGCGGCAcGCUGGcguGcgGUCa -3' miRNA: 3'- -GUUUCGCGUCGU-CGGUCuuuUuaUAG- -5' |
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20914 | 5' | -46 | NC_004689.1 | + | 12335 | 0.68 | 0.989081 |
Target: 5'- aCGAGGCGCuuguGCGcCCAGAGA---AUCg -3' miRNA: 3'- -GUUUCGCGu---CGUcGGUCUUUuuaUAG- -5' |
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20914 | 5' | -46 | NC_004689.1 | + | 1653 | 0.68 | 0.987402 |
Target: 5'- ---uGCGCuucuGGCAGCCAGAGuu---UCg -3' miRNA: 3'- guuuCGCG----UCGUCGGUCUUuuuauAG- -5' |
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20914 | 5' | -46 | NC_004689.1 | + | 10537 | 0.68 | 0.983453 |
Target: 5'- gGAGGgGUGGCcguuGCCGGggGAGUGg- -3' miRNA: 3'- gUUUCgCGUCGu---CGGUCuuUUUAUag -5' |
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20914 | 5' | -46 | NC_004689.1 | + | 57388 | 0.7 | 0.962158 |
Target: 5'- gAGAGCGUAGCuguaAGCguGAGcGAUGUUg -3' miRNA: 3'- gUUUCGCGUCG----UCGguCUUuUUAUAG- -5' |
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20914 | 5' | -46 | NC_004689.1 | + | 46105 | 0.73 | 0.875915 |
Target: 5'- ---cGCGguGC-GCCAGGAAcGAUGUCa -3' miRNA: 3'- guuuCGCguCGuCGGUCUUU-UUAUAG- -5' |
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20914 | 5' | -46 | NC_004689.1 | + | 36163 | 0.75 | 0.800745 |
Target: 5'- ---uGCGCAuaaugcGCGGCCAGGAGAAUcauuGUCg -3' miRNA: 3'- guuuCGCGU------CGUCGGUCUUUUUA----UAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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