miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20918 5' -52.7 NC_004689.1 + 6887 0.66 0.866167
Target:  5'- gGCUGCcAgaGCAuuGCACGCCGa-- -3'
miRNA:   3'- aCGACGuUaaCGUugUGUGCGGCcuu -5'
20918 5' -52.7 NC_004689.1 + 3242 0.66 0.849127
Target:  5'- -uCUGCu-UUGCAGCuucuuccauauGCACGCCGGu- -3'
miRNA:   3'- acGACGuuAACGUUG-----------UGUGCGGCCuu -5'
20918 5' -52.7 NC_004689.1 + 15976 0.66 0.849127
Target:  5'- uUGUUGCGgaaAUUcGCcu-GCACGCCGGGAu -3'
miRNA:   3'- -ACGACGU---UAA-CGuugUGUGCGGCCUU- -5'
20918 5' -52.7 NC_004689.1 + 54344 0.68 0.740503
Target:  5'- aUGC-GCGAUUGCAuCACGCGaCGGu- -3'
miRNA:   3'- -ACGaCGUUAACGUuGUGUGCgGCCuu -5'
20918 5' -52.7 NC_004689.1 + 69042 0.69 0.707779
Target:  5'- gUGUUGCAAUUGCAGCAaugGCGuuGu-- -3'
miRNA:   3'- -ACGACGUUAACGUUGUg--UGCggCcuu -5'
20918 5' -52.7 NC_004689.1 + 10559 0.69 0.66311
Target:  5'- cUGCUGCuGUU-CGGgAUugGCCGGAGg -3'
miRNA:   3'- -ACGACGuUAAcGUUgUGugCGGCCUU- -5'
20918 5' -52.7 NC_004689.1 + 38188 0.71 0.539771
Target:  5'- uUGCUGUA---GUAGCGCACGCCGa-- -3'
miRNA:   3'- -ACGACGUuaaCGUUGUGUGCGGCcuu -5'
20918 5' -52.7 NC_004689.1 + 27003 0.72 0.484954
Target:  5'- cGCUGCGucaaucgcgcgcuGUUGCuugcGCAuCAUGCCGGAGa -3'
miRNA:   3'- aCGACGU-------------UAACGu---UGU-GUGCGGCCUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.