Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20918 | 5' | -52.7 | NC_004689.1 | + | 6887 | 0.66 | 0.866167 |
Target: 5'- gGCUGCcAgaGCAuuGCACGCCGa-- -3' miRNA: 3'- aCGACGuUaaCGUugUGUGCGGCcuu -5' |
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20918 | 5' | -52.7 | NC_004689.1 | + | 3242 | 0.66 | 0.849127 |
Target: 5'- -uCUGCu-UUGCAGCuucuuccauauGCACGCCGGu- -3' miRNA: 3'- acGACGuuAACGUUG-----------UGUGCGGCCuu -5' |
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20918 | 5' | -52.7 | NC_004689.1 | + | 15976 | 0.66 | 0.849127 |
Target: 5'- uUGUUGCGgaaAUUcGCcu-GCACGCCGGGAu -3' miRNA: 3'- -ACGACGU---UAA-CGuugUGUGCGGCCUU- -5' |
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20918 | 5' | -52.7 | NC_004689.1 | + | 54344 | 0.68 | 0.740503 |
Target: 5'- aUGC-GCGAUUGCAuCACGCGaCGGu- -3' miRNA: 3'- -ACGaCGUUAACGUuGUGUGCgGCCuu -5' |
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20918 | 5' | -52.7 | NC_004689.1 | + | 69042 | 0.69 | 0.707779 |
Target: 5'- gUGUUGCAAUUGCAGCAaugGCGuuGu-- -3' miRNA: 3'- -ACGACGUUAACGUUGUg--UGCggCcuu -5' |
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20918 | 5' | -52.7 | NC_004689.1 | + | 10559 | 0.69 | 0.66311 |
Target: 5'- cUGCUGCuGUU-CGGgAUugGCCGGAGg -3' miRNA: 3'- -ACGACGuUAAcGUUgUGugCGGCCUU- -5' |
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20918 | 5' | -52.7 | NC_004689.1 | + | 38188 | 0.71 | 0.539771 |
Target: 5'- uUGCUGUA---GUAGCGCACGCCGa-- -3' miRNA: 3'- -ACGACGUuaaCGUUGUGUGCGGCcuu -5' |
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20918 | 5' | -52.7 | NC_004689.1 | + | 27003 | 0.72 | 0.484954 |
Target: 5'- cGCUGCGucaaucgcgcgcuGUUGCuugcGCAuCAUGCCGGAGa -3' miRNA: 3'- aCGACGU-------------UAACGu---UGU-GUGCGGCCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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