miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20919 5' -51.7 NC_004689.1 + 45522 0.66 0.907386
Target:  5'- --gGGCCgGUGCUGCCGGAGauAGgGa -3'
miRNA:   3'- augUUGGaCAUGACGGUUUCgcUCgC- -5'
20919 5' -51.7 NC_004689.1 + 21759 0.66 0.893312
Target:  5'- cGCGGCCUGaucgGCUGgCGGGG-GAGCc -3'
miRNA:   3'- aUGUUGGACa---UGACgGUUUCgCUCGc -5'
20919 5' -51.7 NC_004689.1 + 48949 0.66 0.891104
Target:  5'- -uCGACCUGUGCgGCCAcgucuucaccaccgGAcugcgacugcGCGAGCa -3'
miRNA:   3'- auGUUGGACAUGaCGGU--------------UU----------CGCUCGc -5'
20919 5' -51.7 NC_004689.1 + 32789 0.67 0.878128
Target:  5'- aGCGGCUUGagcuUGCUGCCGucaaCGAGCa -3'
miRNA:   3'- aUGUUGGAC----AUGACGGUuuc-GCUCGc -5'
20919 5' -51.7 NC_004689.1 + 11630 0.67 0.844627
Target:  5'- gGCAGCCgGUGCgcccugugUGCCGucAGCG-GCGg -3'
miRNA:   3'- aUGUUGGaCAUG--------ACGGUu-UCGCuCGC- -5'
20919 5' -51.7 NC_004689.1 + 23919 0.68 0.797572
Target:  5'- gGCAGCCUGaAUUG-CAGAGCcAGCGc -3'
miRNA:   3'- aUGUUGGACaUGACgGUUUCGcUCGC- -5'
20919 5' -51.7 NC_004689.1 + 39465 0.7 0.724433
Target:  5'- cGguGCCUGUcgguGCUGCCAGucguGCGGGaCGa -3'
miRNA:   3'- aUguUGGACA----UGACGGUUu---CGCUC-GC- -5'
20919 5' -51.7 NC_004689.1 + 7314 0.71 0.66905
Target:  5'- cACGGCCcuUGUAgUGCUu--GCGAGCGu -3'
miRNA:   3'- aUGUUGG--ACAUgACGGuuuCGCUCGC- -5'
20919 5' -51.7 NC_004689.1 + 7848 0.71 0.635287
Target:  5'- cGCAGCCUuucGUGCUGgCGucaucuugugaGAGCGAGCc -3'
miRNA:   3'- aUGUUGGA---CAUGACgGU-----------UUCGCUCGc -5'
20919 5' -51.7 NC_004689.1 + 20970 0.73 0.545843
Target:  5'- gGCuGCCUGUGCgaucUGCCGGauaccuucGGCGAGCu -3'
miRNA:   3'- aUGuUGGACAUG----ACGGUU--------UCGCUCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.