miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2092 3' -59.9 NC_001348.1 + 105587 0.66 0.703915
Target:  5'- gCACgAgugguUCUGcGGCAGGGucGGGUUCCa -3'
miRNA:   3'- -GUGgU-----AGAC-CUGUCCCccCCCAAGGc -5'
2092 3' -59.9 NC_001348.1 + 124205 0.66 0.703915
Target:  5'- gCACgAgugguUCUGcGGCAGGGucGGGUUCCa -3'
miRNA:   3'- -GUGgU-----AGAC-CUGUCCCccCCCAAGGc -5'
2092 3' -59.9 NC_001348.1 + 90306 0.67 0.664073
Target:  5'- aUACCAUauaUGGACAuccauaGGGGGGGUUa-- -3'
miRNA:   3'- -GUGGUAg--ACCUGUc-----CCCCCCCAAggc -5'
2092 3' -59.9 NC_001348.1 + 109763 0.67 0.664073
Target:  5'- cCGCCga-UGGGgAGGGGGGcGGUaccccgCCGa -3'
miRNA:   3'- -GUGGuagACCUgUCCCCCC-CCAa-----GGC- -5'
2092 3' -59.9 NC_001348.1 + 104937 0.69 0.524577
Target:  5'- aACCGgggGGGgguuauuuuCGGGGGGGGGU-CCGa -3'
miRNA:   3'- gUGGUagaCCU---------GUCCCCCCCCAaGGC- -5'
2092 3' -59.9 NC_001348.1 + 124855 0.69 0.524577
Target:  5'- aACCGgggGGGgguuauuuuCGGGGGGGGGU-CCGa -3'
miRNA:   3'- gUGGUagaCCU---------GUCCCCCCCCAaGGC- -5'
2092 3' -59.9 NC_001348.1 + 247 0.7 0.458751
Target:  5'- -----gCUGG-CGGGGGGGGGUUucCCGg -3'
miRNA:   3'- gugguaGACCuGUCCCCCCCCAA--GGC- -5'
2092 3' -59.9 NC_001348.1 + 124296 0.71 0.406005
Target:  5'- gGCCAcauuacUCUGGGaauCGGGGGGaGGGcaUUCCGa -3'
miRNA:   3'- gUGGU------AGACCU---GUCCCCC-CCC--AAGGC- -5'
2092 3' -59.9 NC_001348.1 + 105496 0.71 0.406005
Target:  5'- gGCCAcauuacUCUGGGaauCGGGGGGaGGGcaUUCCGa -3'
miRNA:   3'- gUGGU------AGACCU---GUCCCCC-CCC--AAGGC- -5'
2092 3' -59.9 NC_001348.1 + 92916 1.08 0.001261
Target:  5'- aCACCAUCUGGACAGGGGGGGGUUCCGu -3'
miRNA:   3'- -GUGGUAGACCUGUCCCCCCCCAAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.