miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20921 5' -45.7 NC_004690.1 + 26045 0.66 0.999752
Target:  5'- -aCUUgACUCUGAGUuucguUUGGUUgAUGUc -3'
miRNA:   3'- uaGAGaUGAGACUCA-----AACCAAgUAUA- -5'
20921 5' -45.7 NC_004690.1 + 95247 0.66 0.999752
Target:  5'- -aCUUgACUCUGAGUuucguUUGGUUgAUGUc -3'
miRNA:   3'- uaGAGaUGAGACUCA-----AACCAAgUAUA- -5'
20921 5' -45.7 NC_004690.1 + 95157 0.66 0.999752
Target:  5'- -aCUUgACUCUGAGUuucguUUGGUUgAUGUc -3'
miRNA:   3'- uaGAGaUGAGACUCA-----AACCAAgUAUA- -5'
20921 5' -45.7 NC_004690.1 + 26179 0.66 0.999752
Target:  5'- -aCUUgACUCUGAGUuucguUUGGUUgAUGUc -3'
miRNA:   3'- uaGAGaUGAGACUCA-----AACCAAgUAUA- -5'
20921 5' -45.7 NC_004690.1 + 23660 0.66 0.999752
Target:  5'- -aCUUgACUCUGAGUuucguUUGGUUgAUGUc -3'
miRNA:   3'- uaGAGaUGAGACUCA-----AACCAAgUAUA- -5'
20921 5' -45.7 NC_004690.1 + 23570 0.66 0.999752
Target:  5'- -aCUUgACUCUGAGUuucguUUGGUUgAUGUc -3'
miRNA:   3'- uaGAGaUGAGACUCA-----AACCAAgUAUA- -5'
20921 5' -45.7 NC_004690.1 + 84735 0.71 0.980129
Target:  5'- -aCUUgACUCUGAGUUUGGUUgGa-- -3'
miRNA:   3'- uaGAGaUGAGACUCAAACCAAgUaua -5'
20921 5' -45.7 NC_004690.1 + 23548 0.71 0.980129
Target:  5'- -aCUUgACUCUGAGUUUGGUUgGa-- -3'
miRNA:   3'- uaGAGaUGAGACUCAAACCAAgUaua -5'
20921 5' -45.7 NC_004690.1 + 23443 0.73 0.952682
Target:  5'- aAUCUCgACUCUGAGUUUcGUUCGa-- -3'
miRNA:   3'- -UAGAGaUGAGACUCAAAcCAAGUaua -5'
20921 5' -45.7 NC_004690.1 + 84840 0.73 0.952682
Target:  5'- aAUCUCgACUCUGAGUUUcGUUCGg-- -3'
miRNA:   3'- -UAGAGaUGAGACUCAAAcCAAGUaua -5'
20921 5' -45.7 NC_004690.1 + 25940 0.76 0.868844
Target:  5'- aAUCUCUAC-CUGAGUUUGG-UCGg-- -3'
miRNA:   3'- -UAGAGAUGaGACUCAAACCaAGUaua -5'
20921 5' -45.7 NC_004690.1 + 26285 0.8 0.685477
Target:  5'- aAUCUCgACUCUGAGUUUGGUUgGa-- -3'
miRNA:   3'- -UAGAGaUGAGACUCAAACCAAgUaua -5'
20921 5' -45.7 NC_004690.1 + 25796 0.85 0.420692
Target:  5'- aAUCUUgACUCUGAGUUUGGUUCAa-- -3'
miRNA:   3'- -UAGAGaUGAGACUCAAACCAAGUaua -5'
20921 5' -45.7 NC_004690.1 + 23765 0.87 0.346258
Target:  5'- aAUCUCUACUCUGAGUUUGG-UCGg-- -3'
miRNA:   3'- -UAGAGAUGAGACUCAAACCaAGUaua -5'
20921 5' -45.7 NC_004690.1 + 95352 0.89 0.246487
Target:  5'- aAUCUCUACUCUGAGUUUGGUUgGg-- -3'
miRNA:   3'- -UAGAGAUGAGACUCAAACCAAgUaua -5'
20921 5' -45.7 NC_004690.1 + 23675 1.04 0.03526
Target:  5'- aAUCUCUACUCUGAGUUUGGUUCAUAUc -3'
miRNA:   3'- -UAGAGAUGAGACUCAAACCAAGUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.