miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20922 3' -44.4 NC_004690.1 + 26088 0.66 0.999979
Target:  5'- aUCAcGCCAuaucccGACcAAACUCAGAGUaGAGa -3'
miRNA:   3'- -AGU-UGGU------UUGcUUUGAGUCUCAgUUC- -5'
20922 3' -44.4 NC_004690.1 + 23617 0.66 0.999979
Target:  5'- aUCAcGCCAuaucccGACcAAACUCAGAGUaGAGa -3'
miRNA:   3'- -AGU-UGGU------UUGcUUUGAGUCUCAgUUC- -5'
20922 3' -44.4 NC_004690.1 + 43689 0.67 0.999971
Target:  5'- uUCAGgcUCGGGCGAAaucgGCUCAGGuUCAGGu -3'
miRNA:   3'- -AGUU--GGUUUGCUU----UGAGUCUcAGUUC- -5'
20922 3' -44.4 NC_004690.1 + 43722 0.67 0.999971
Target:  5'- uUCAGgcUCGGGCGAAaucgGCUCAGGuUCAGGu -3'
miRNA:   3'- -AGUU--GGUUUGCUU----UGAGUCUcAGUUC- -5'
20922 3' -44.4 NC_004690.1 + 9874 0.69 0.999541
Target:  5'- aUCAcuuGCUggGCGAagaggGACUCGuGGUCAAGu -3'
miRNA:   3'- -AGU---UGGuuUGCU-----UUGAGUcUCAGUUC- -5'
20922 3' -44.4 NC_004690.1 + 23403 0.78 0.878226
Target:  5'- aUCAcGCCAuauccAACcAAACUCAGAGUCAAGu -3'
miRNA:   3'- -AGU-UGGU-----UUGcUUUGAGUCUCAGUUC- -5'
20922 3' -44.4 NC_004690.1 + 23495 0.78 0.878226
Target:  5'- gCAAcCCGAACGAAAUUCAGAG-CAAa -3'
miRNA:   3'- aGUU-GGUUUGCUUUGAGUCUCaGUUc -5'
20922 3' -44.4 NC_004690.1 + 84880 0.78 0.878226
Target:  5'- aUCAcGCCAuauccAACcAAACUCAGAGUCAAGu -3'
miRNA:   3'- -AGU-UGGU-----UUGcUUUGAGUCUCAGUUC- -5'
20922 3' -44.4 NC_004690.1 + 25935 0.79 0.870188
Target:  5'- -uGAUUGAACcAAACUCAGAGUCAAGa -3'
miRNA:   3'- agUUGGUUUGcUUUGAGUCUCAGUUC- -5'
20922 3' -44.4 NC_004690.1 + 26137 0.79 0.861888
Target:  5'- aUCAcACCAuauccAACcAAACUCAGAGUCGAGa -3'
miRNA:   3'- -AGU-UGGU-----UUGcUUUGAGUCUCAGUUC- -5'
20922 3' -44.4 NC_004690.1 + 15585 0.81 0.745266
Target:  5'- gUCAcCUAAACGAGACUUGGGGUCGAu -3'
miRNA:   3'- -AGUuGGUUUGCUUUGAGUCUCAGUUc -5'
20922 3' -44.4 NC_004690.1 + 23584 0.96 0.163709
Target:  5'- aUAGCuCGAACGAAACUCAGAGUCGAGa -3'
miRNA:   3'- aGUUG-GUUUGCUUUGAGUCUCAGUUC- -5'
20922 3' -44.4 NC_004690.1 + 84699 1 0.109625
Target:  5'- cCAAcCCGAACGAAACUCAGAGUCGAGa -3'
miRNA:   3'- aGUU-GGUUUGCUUUGAGUCUCAGUUC- -5'
20922 3' -44.4 NC_004690.1 + 25762 1.02 0.074826
Target:  5'- aUCAACCAAACGAAAgUCAGAGUCAAGu -3'
miRNA:   3'- -AGUUGGUUUGCUUUgAGUCUCAGUUC- -5'
20922 3' -44.4 NC_004690.1 + 23709 1.11 0.023101
Target:  5'- aUCAACCAAACGAAACUCAGAGUCAAGu -3'
miRNA:   3'- -AGUUGGUUUGCUUUGAGUCUCAGUUC- -5'
20922 3' -44.4 NC_004690.1 + 23799 1.11 0.023101
Target:  5'- aUCAACCAAACGAAACUCAGAGUCAAGu -3'
miRNA:   3'- -AGUUGGUUUGCUUUGAGUCUCAGUUC- -5'
20922 3' -44.4 NC_004690.1 + 26319 1.11 0.023101
Target:  5'- aUCAACCAAACGAAACUCAGAGUCAAGu -3'
miRNA:   3'- -AGUUGGUUUGCUUUGAGUCUCAGUUC- -5'
20922 3' -44.4 NC_004690.1 + 95296 1.11 0.023101
Target:  5'- aUCAACCAAACGAAACUCAGAGUCAAGu -3'
miRNA:   3'- -AGUUGGUUUGCUUUGAGUCUCAGUUC- -5'
20922 3' -44.4 NC_004690.1 + 95386 1.11 0.023101
Target:  5'- aUCAACCAAACGAAACUCAGAGUCAAGu -3'
miRNA:   3'- -AGUUGGUUUGCUUUGAGUCUCAGUUC- -5'
20922 3' -44.4 NC_004690.1 + 25906 1.11 0.023101
Target:  5'- aUCAACCAAACGAAACUCAGAGUCAAGu -3'
miRNA:   3'- -AGUUGGUUUGCUUUGAGUCUCAGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.