miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20922 5' -49 NC_004690.1 + 25901 0.69 0.953788
Target:  5'- -aCUUGACUCUGAcuuucGUUUGGUUGa--- -3'
miRNA:   3'- uaGAGCUGAGACU-----CAAACCAACcuau -5'
20922 5' -49 NC_004690.1 + 26045 0.72 0.881916
Target:  5'- -aCUUGACUCUGAGUuucguUUGGUUGa--- -3'
miRNA:   3'- uaGAGCUGAGACUCA-----AACCAACcuau -5'
20922 5' -49 NC_004690.1 + 95247 0.72 0.881916
Target:  5'- -aCUUGACUCUGAGUuucguUUGGUUGa--- -3'
miRNA:   3'- uaGAGCUGAGACUCA-----AACCAACcuau -5'
20922 5' -49 NC_004690.1 + 95157 0.72 0.881916
Target:  5'- -aCUUGACUCUGAGUuucguUUGGUUGa--- -3'
miRNA:   3'- uaGAGCUGAGACUCA-----AACCAACcuau -5'
20922 5' -49 NC_004690.1 + 26179 0.72 0.881916
Target:  5'- -aCUUGACUCUGAGUuucguUUGGUUGa--- -3'
miRNA:   3'- uaGAGCUGAGACUCA-----AACCAACcuau -5'
20922 5' -49 NC_004690.1 + 23660 0.72 0.881916
Target:  5'- -aCUUGACUCUGAGUuucguUUGGUUGa--- -3'
miRNA:   3'- uaGAGCUGAGACUCA-----AACCAACcuau -5'
20922 5' -49 NC_004690.1 + 23570 0.72 0.881916
Target:  5'- -aCUUGACUCUGAGUuucguUUGGUUGa--- -3'
miRNA:   3'- uaGAGCUGAGACUCA-----AACCAACcuau -5'
20922 5' -49 NC_004690.1 + 23675 0.72 0.866091
Target:  5'- aAUCUCuACUCUGAGUUUGGUUc---- -3'
miRNA:   3'- -UAGAGcUGAGACUCAAACCAAccuau -5'
20922 5' -49 NC_004690.1 + 25940 0.74 0.77338
Target:  5'- aAUCUCuAC-CUGAGUUUGGUcgGGAUAu -3'
miRNA:   3'- -UAGAGcUGaGACUCAAACCAa-CCUAU- -5'
20922 5' -49 NC_004690.1 + 23443 0.75 0.731483
Target:  5'- aAUCUCGACUCUGAGUUUcGUUcGAg- -3'
miRNA:   3'- -UAGAGCUGAGACUCAAAcCAAcCUau -5'
20922 5' -49 NC_004690.1 + 25796 0.8 0.469986
Target:  5'- aAUCUUGACUCUGAGUUUGGUUc---- -3'
miRNA:   3'- -UAGAGCUGAGACUCAAACCAAccuau -5'
20922 5' -49 NC_004690.1 + 23765 0.84 0.27798
Target:  5'- aAUCUCuACUCUGAGUUUGGUcgGGAUAu -3'
miRNA:   3'- -UAGAGcUGAGACUCAAACCAa-CCUAU- -5'
20922 5' -49 NC_004690.1 + 95352 0.87 0.181643
Target:  5'- aAUCUCuACUCUGAGUUUGGUUGGGa- -3'
miRNA:   3'- -UAGAGcUGAGACUCAAACCAACCUau -5'
20922 5' -49 NC_004690.1 + 84840 0.89 0.153883
Target:  5'- aAUCUCGACUCUGAGUUUcguucgGGUUGGAUc -3'
miRNA:   3'- -UAGAGCUGAGACUCAAA------CCAACCUAu -5'
20922 5' -49 NC_004690.1 + 23548 0.96 0.051394
Target:  5'- -aCUUGACUCUGAGUUUGGUUGGAUAu -3'
miRNA:   3'- uaGAGCUGAGACUCAAACCAACCUAU- -5'
20922 5' -49 NC_004690.1 + 84735 0.96 0.051394
Target:  5'- -aCUUGACUCUGAGUUUGGUUGGAUAu -3'
miRNA:   3'- uaGAGCUGAGACUCAAACCAACCUAU- -5'
20922 5' -49 NC_004690.1 + 26285 1.05 0.014213
Target:  5'- aAUCUCGACUCUGAGUUUGGUUGGAUAu -3'
miRNA:   3'- -UAGAGCUGAGACUCAAACCAACCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.