miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20925 5' -51.2 NC_004690.1 + 25940 0.66 0.978499
Target:  5'- aAUCUCuAC-CUGAGUUUgG-UCGGGa -3'
miRNA:   3'- -UAGAGcUGaGACUCAAAgCaAGCCCa -5'
20925 5' -51.2 NC_004690.1 + 8433 0.67 0.951921
Target:  5'- aGUCUaCGAUUCgaaaUUUCGUUCGGGa -3'
miRNA:   3'- -UAGA-GCUGAGacucAAAGCAAGCCCa -5'
20925 5' -51.2 NC_004690.1 + 23675 0.68 0.937881
Target:  5'- aAUCUCuACUCUGAGUUUgGUUCa--- -3'
miRNA:   3'- -UAGAGcUGAGACUCAAAgCAAGccca -5'
20925 5' -51.2 NC_004690.1 + 84735 0.69 0.921457
Target:  5'- -aCUUGACUCUGAGUUUgGUUggauaUGGcGUg -3'
miRNA:   3'- uaGAGCUGAGACUCAAAgCAA-----GCC-CA- -5'
20925 5' -51.2 NC_004690.1 + 23548 0.69 0.921457
Target:  5'- -aCUUGACUCUGAGUUUgGUUggauaUGGcGUg -3'
miRNA:   3'- uaGAGCUGAGACUCAAAgCAA-----GCC-CA- -5'
20925 5' -51.2 NC_004690.1 + 25901 0.72 0.795958
Target:  5'- -aCUUGACUCUGAcUUUCGUUUGGu- -3'
miRNA:   3'- uaGAGCUGAGACUcAAAGCAAGCCca -5'
20925 5' -51.2 NC_004690.1 + 95352 0.72 0.776571
Target:  5'- aAUCUCuACUCUGAGUUUgGUU-GGGa -3'
miRNA:   3'- -UAGAGcUGAGACUCAAAgCAAgCCCa -5'
20925 5' -51.2 NC_004690.1 + 23356 0.73 0.725769
Target:  5'- cUUUUG-CUCUGAaUUUCGUUCGGGUu -3'
miRNA:   3'- uAGAGCuGAGACUcAAAGCAAGCCCA- -5'
20925 5' -51.2 NC_004690.1 + 25796 0.75 0.597137
Target:  5'- aAUCUUGACUCUGAGUUUgGUUCa--- -3'
miRNA:   3'- -UAGAGCUGAGACUCAAAgCAAGccca -5'
20925 5' -51.2 NC_004690.1 + 23765 0.76 0.586384
Target:  5'- aAUCUCuACUCUGAGUUUgG-UCGGGa -3'
miRNA:   3'- -UAGAGcUGAGACUCAAAgCaAGCCCa -5'
20925 5' -51.2 NC_004690.1 + 26285 0.78 0.462254
Target:  5'- aAUCUCGACUCUGAGUUUgGUUgGauauGGUg -3'
miRNA:   3'- -UAGAGCUGAGACUCAAAgCAAgC----CCA- -5'
20925 5' -51.2 NC_004690.1 + 26179 0.83 0.238415
Target:  5'- -aCUUGACUCUGAGUUUCGUUUGGu- -3'
miRNA:   3'- uaGAGCUGAGACUCAAAGCAAGCCca -5'
20925 5' -51.2 NC_004690.1 + 95157 0.83 0.238415
Target:  5'- -aCUUGACUCUGAGUUUCGUUUGGu- -3'
miRNA:   3'- uaGAGCUGAGACUCAAAGCAAGCCca -5'
20925 5' -51.2 NC_004690.1 + 95247 0.83 0.238415
Target:  5'- -aCUUGACUCUGAGUUUCGUUUGGu- -3'
miRNA:   3'- uaGAGCUGAGACUCAAAGCAAGCCca -5'
20925 5' -51.2 NC_004690.1 + 23660 0.83 0.238415
Target:  5'- -aCUUGACUCUGAGUUUCGUUUGGu- -3'
miRNA:   3'- uaGAGCUGAGACUCAAAGCAAGCCca -5'
20925 5' -51.2 NC_004690.1 + 23570 0.83 0.238415
Target:  5'- -aCUUGACUCUGAGUUUCGUUUGGu- -3'
miRNA:   3'- uaGAGCUGAGACUCAAAGCAAGCCca -5'
20925 5' -51.2 NC_004690.1 + 26045 0.83 0.238415
Target:  5'- -aCUUGACUCUGAGUUUCGUUUGGu- -3'
miRNA:   3'- uaGAGCUGAGACUCAAAGCAAGCCca -5'
20925 5' -51.2 NC_004690.1 + 23443 0.91 0.090179
Target:  5'- aAUCUCGACUCUGAGUUUCGUUCGa-- -3'
miRNA:   3'- -UAGAGCUGAGACUCAAAGCAAGCcca -5'
20925 5' -51.2 NC_004690.1 + 84840 1.05 0.010365
Target:  5'- aAUCUCGACUCUGAGUUUCGUUCGGGUu -3'
miRNA:   3'- -UAGAGCUGAGACUCAAAGCAAGCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.