miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20926 5' -47.1 NC_004690.1 + 17535 0.66 0.999037
Target:  5'- -----cCUGAAUuaUGAgGCUGCUGCUCCu -3'
miRNA:   3'- caaacaGAUUUA--GCU-UGACGACGGGG- -5'
20926 5' -47.1 NC_004690.1 + 68330 0.7 0.979782
Target:  5'- cUUUGUCguucuGAUUGAACuUGCUGCgaCCg -3'
miRNA:   3'- cAAACAGau---UUAGCUUG-ACGACGg-GG- -5'
20926 5' -47.1 NC_004690.1 + 9821 0.7 0.979782
Target:  5'- ---aGUCUGGGUCaaaAACUGUUGCCUUu -3'
miRNA:   3'- caaaCAGAUUUAGc--UUGACGACGGGG- -5'
20926 5' -47.1 NC_004690.1 + 12154 0.71 0.971606
Target:  5'- uUUUGUCguGAUCcugauacucAACUGCUGUCCCa -3'
miRNA:   3'- cAAACAGauUUAGc--------UUGACGACGGGG- -5'
20926 5' -47.1 NC_004690.1 + 72085 0.72 0.957331
Target:  5'- --aUGUUUAGcgaaaCGGACUGC-GCCCCa -3'
miRNA:   3'- caaACAGAUUua---GCUUGACGaCGGGG- -5'
20926 5' -47.1 NC_004690.1 + 18689 1.14 0.007034
Target:  5'- uGUUUGUCUAAAUCGAACUGCUGCCCCg -3'
miRNA:   3'- -CAAACAGAUUUAGCUUGACGACGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.