miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20928 3' -45 NC_004690.1 + 53945 0.66 0.999942
Target:  5'- aUAUGUCaAACCAAAUUUAcGAuGUCAAGu -3'
miRNA:   3'- -GUAUAGgUUGGUUUGAGU-CU-CAGUUC- -5'
20928 3' -45 NC_004690.1 + 15588 0.67 0.999896
Target:  5'- aAUGUCaccuaAACgAGACUUGGGGUCGAu -3'
miRNA:   3'- gUAUAGg----UUGgUUUGAGUCUCAGUUc -5'
20928 3' -45 NC_004690.1 + 44340 0.71 0.994818
Target:  5'- uGUcgUCGGCCAGACaaAGAGUCGAa -3'
miRNA:   3'- gUAuaGGUUGGUUUGagUCUCAGUUc -5'
20928 3' -45 NC_004690.1 + 23713 0.71 0.993919
Target:  5'- cCAUAUUgAACCAAAUUUAGAG-CAAu -3'
miRNA:   3'- -GUAUAGgUUGGUUUGAGUCUCaGUUc -5'
20928 3' -45 NC_004690.1 + 23536 0.71 0.992898
Target:  5'- gAUA-UgAACCAAACUCAGAGUaGAGa -3'
miRNA:   3'- gUAUaGgUUGGUUUGAGUCUCAgUUC- -5'
20928 3' -45 NC_004690.1 + 25754 0.77 0.898372
Target:  5'- aGUAUgacaUCAACCAAACgaaagUCAGAGUCAAGu -3'
miRNA:   3'- gUAUA----GGUUGGUUUG-----AGUCUCAGUUC- -5'
20928 3' -45 NC_004690.1 + 26319 0.79 0.803683
Target:  5'- ----aUCAACCAaacgaAACUCAGAGUCAAGu -3'
miRNA:   3'- guauaGGUUGGU-----UUGAGUCUCAGUUC- -5'
20928 3' -45 NC_004690.1 + 95296 0.79 0.803683
Target:  5'- ----aUCAACCAaacgaAACUCAGAGUCAAGu -3'
miRNA:   3'- guauaGGUUGGU-----UUGAGUCUCAGUUC- -5'
20928 3' -45 NC_004690.1 + 95386 0.79 0.803683
Target:  5'- ----aUCAACCAaacgaAACUCAGAGUCAAGu -3'
miRNA:   3'- guauaGGUUGGU-----UUGAGUCUCAGUUC- -5'
20928 3' -45 NC_004690.1 + 23799 0.79 0.803683
Target:  5'- ----aUCAACCAaacgaAACUCAGAGUCAAGu -3'
miRNA:   3'- guauaGGUUGGU-----UUGAGUCUCAGUUC- -5'
20928 3' -45 NC_004690.1 + 23709 0.79 0.803683
Target:  5'- ----aUCAACCAaacgaAACUCAGAGUCAAGu -3'
miRNA:   3'- guauaGGUUGGU-----UUGAGUCUCAGUUC- -5'
20928 3' -45 NC_004690.1 + 25906 0.79 0.803683
Target:  5'- ----aUCAACCAaacgaAACUCAGAGUCAAGu -3'
miRNA:   3'- guauaGGUUGGU-----UUGAGUCUCAGUUC- -5'
20928 3' -45 NC_004690.1 + 23586 0.83 0.62968
Target:  5'- aCAUAgcUCgAACgAAACUCAGAGUCGAGa -3'
miRNA:   3'- -GUAU--AGgUUGgUUUGAGUCUCAGUUC- -5'
20928 3' -45 NC_004690.1 + 84696 0.88 0.38635
Target:  5'- --gAUCCAACCcgaacgAAACUCAGAGUCGAGa -3'
miRNA:   3'- guaUAGGUUGG------UUUGAGUCUCAGUUC- -5'
20928 3' -45 NC_004690.1 + 26082 0.89 0.333524
Target:  5'- cCAUAUcCCGACCAAACUCAGAGUaGAGa -3'
miRNA:   3'- -GUAUA-GGUUGGUUUGAGUCUCAgUUC- -5'
20928 3' -45 NC_004690.1 + 23623 0.89 0.333524
Target:  5'- cCAUAUcCCGACCAAACUCAGAGUaGAGa -3'
miRNA:   3'- -GUAUA-GGUUGGUUUGAGUCUCAgUUC- -5'
20928 3' -45 NC_004690.1 + 25934 0.89 0.325252
Target:  5'- --gAUUgAACCAAACUCAGAGUCAAGa -3'
miRNA:   3'- guaUAGgUUGGUUUGAGUCUCAGUUC- -5'
20928 3' -45 NC_004690.1 + 95210 0.9 0.309167
Target:  5'- cCAUAUcCCAACCAAACUCAGAGUaGAGa -3'
miRNA:   3'- -GUAUA-GGUUGGUUUGAGUCUCAgUUC- -5'
20928 3' -45 NC_004690.1 + 84874 1.1 0.022029
Target:  5'- cCAUAUCCAACCAAACUCAGAGUCAAGu -3'
miRNA:   3'- -GUAUAGGUUGGUUUGAGUCUCAGUUC- -5'
20928 3' -45 NC_004690.1 + 23409 1.1 0.022029
Target:  5'- cCAUAUCCAACCAAACUCAGAGUCAAGu -3'
miRNA:   3'- -GUAUAGGUUGGUUUGAGUCUCAGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.