miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20928 5' -48.8 NC_004690.1 + 95325 0.71 0.938616
Target:  5'- -aUUUGACUgaGAGUUUUGUUCaAGCa -3'
miRNA:   3'- uaGAGCUGAgaCUCAAAGCAAGcUCG- -5'
20928 5' -48.8 NC_004690.1 + 95352 0.71 0.933375
Target:  5'- aAUCUCuACUCUGAGUUUgGUUgGgauauGGCg -3'
miRNA:   3'- -UAGAGcUGAGACUCAAAgCAAgC-----UCG- -5'
20928 5' -48.8 NC_004690.1 + 23356 0.71 0.927861
Target:  5'- cUUUUG-CUCUGAaUUUCGUUCGGGUu -3'
miRNA:   3'- uAGAGCuGAGACUcAAAGCAAGCUCG- -5'
20928 5' -48.8 NC_004690.1 + 25901 0.71 0.927861
Target:  5'- -aCUUGACUCUGAcUUUCGUUUGGu- -3'
miRNA:   3'- uaGAGCUGAGACUcAAAGCAAGCUcg -5'
20928 5' -48.8 NC_004690.1 + 23675 0.71 0.922073
Target:  5'- aAUCUCuACUCUGAGUUUgGUUCa--- -3'
miRNA:   3'- -UAGAGcUGAGACUCAAAgCAAGcucg -5'
20928 5' -48.8 NC_004690.1 + 23765 0.73 0.881664
Target:  5'- aAUCUCuACUCUGAGUUUgG-UCGGGa -3'
miRNA:   3'- -UAGAGcUGAGACUCAAAgCaAGCUCg -5'
20928 5' -48.8 NC_004690.1 + 23548 0.76 0.744631
Target:  5'- -aCUUGACUCUGAGUUUgGUUgGAuaugGCg -3'
miRNA:   3'- uaGAGCUGAGACUCAAAgCAAgCU----CG- -5'
20928 5' -48.8 NC_004690.1 + 84735 0.76 0.744631
Target:  5'- -aCUUGACUCUGAGUUUgGUUgGAuaugGCg -3'
miRNA:   3'- uaGAGCUGAGACUCAAAgCAAgCU----CG- -5'
20928 5' -48.8 NC_004690.1 + 25796 0.79 0.560699
Target:  5'- aAUCUUGACUCUGAGUUUgGUUCa--- -3'
miRNA:   3'- -UAGAGCUGAGACUCAAAgCAAGcucg -5'
20928 5' -48.8 NC_004690.1 + 26285 0.83 0.381914
Target:  5'- aAUCUCGACUCUGAGUUUgGUUgGAu- -3'
miRNA:   3'- -UAGAGCUGAGACUCAAAgCAAgCUcg -5'
20928 5' -48.8 NC_004690.1 + 26045 0.84 0.355956
Target:  5'- -aCUUGACUCUGAGUUUCGUUUGGu- -3'
miRNA:   3'- uaGAGCUGAGACUCAAAGCAAGCUcg -5'
20928 5' -48.8 NC_004690.1 + 23570 0.84 0.355956
Target:  5'- -aCUUGACUCUGAGUUUCGUUUGGu- -3'
miRNA:   3'- uaGAGCUGAGACUCAAAGCAAGCUcg -5'
20928 5' -48.8 NC_004690.1 + 95247 0.84 0.355956
Target:  5'- -aCUUGACUCUGAGUUUCGUUUGGu- -3'
miRNA:   3'- uaGAGCUGAGACUCAAAGCAAGCUcg -5'
20928 5' -48.8 NC_004690.1 + 95157 0.84 0.355956
Target:  5'- -aCUUGACUCUGAGUUUCGUUUGGu- -3'
miRNA:   3'- uaGAGCUGAGACUCAAAGCAAGCUcg -5'
20928 5' -48.8 NC_004690.1 + 26179 0.84 0.355956
Target:  5'- -aCUUGACUCUGAGUUUCGUUUGGu- -3'
miRNA:   3'- uaGAGCUGAGACUCAAAGCAAGCUcg -5'
20928 5' -48.8 NC_004690.1 + 23660 0.84 0.355956
Target:  5'- -aCUUGACUCUGAGUUUCGUUUGGu- -3'
miRNA:   3'- uaGAGCUGAGACUCAAAGCAAGCUcg -5'
20928 5' -48.8 NC_004690.1 + 84840 1.05 0.019653
Target:  5'- aAUCUCGACUCUGAGUUUCGUUCGGGUu -3'
miRNA:   3'- -UAGAGCUGAGACUCAAAGCAAGCUCG- -5'
20928 5' -48.8 NC_004690.1 + 23443 1.11 0.00833
Target:  5'- aAUCUCGACUCUGAGUUUCGUUCGAGCu -3'
miRNA:   3'- -UAGAGCUGAGACUCAAAGCAAGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.