miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20929 3' -44.4 NC_004690.1 + 15585 0.68 0.999832
Target:  5'- gUCAcCUAAACGAGAcUUGGGGUCGAu -3'
miRNA:   3'- -AGUuGGUUUGCUUUcAGUCUCAGUUc -5'
20929 3' -44.4 NC_004690.1 + 27167 0.69 0.99942
Target:  5'- uUCAAUCuGAUGGcaaugAAGUCAGAccGUCGAGa -3'
miRNA:   3'- -AGUUGGuUUGCU-----UUCAGUCU--CAGUUC- -5'
20929 3' -44.4 NC_004690.1 + 23495 0.7 0.998623
Target:  5'- gCAAcCCGAACGAAAuUCAGAG-CAAa -3'
miRNA:   3'- aGUU-GGUUUGCUUUcAGUCUCaGUUc -5'
20929 3' -44.4 NC_004690.1 + 25930 0.7 0.997958
Target:  5'- -gAACCAAAC-----UCAGAGUCAAGa -3'
miRNA:   3'- agUUGGUUUGcuuucAGUCUCAGUUC- -5'
20929 3' -44.4 NC_004690.1 + 23415 0.75 0.968195
Target:  5'- cCAACCAAAC-----UCAGAGUCAAGu -3'
miRNA:   3'- aGUUGGUUUGcuuucAGUCUCAGUUC- -5'
20929 3' -44.4 NC_004690.1 + 84868 0.75 0.968195
Target:  5'- cCAACCAAAC-----UCAGAGUCAAGu -3'
miRNA:   3'- aGUUGGUUUGcuuucAGUCUCAGUUC- -5'
20929 3' -44.4 NC_004690.1 + 26149 0.75 0.960913
Target:  5'- cCAACCAAAC-----UCAGAGUCGAGa -3'
miRNA:   3'- aGUUGGUUUGcuuucAGUCUCAGUUC- -5'
20929 3' -44.4 NC_004690.1 + 23584 0.83 0.679093
Target:  5'- aUAGCuCGAACGAAAcUCAGAGUCGAGa -3'
miRNA:   3'- aGUUG-GUUUGCUUUcAGUCUCAGUUC- -5'
20929 3' -44.4 NC_004690.1 + 84699 0.86 0.522026
Target:  5'- cCAAcCCGAACGAAAcUCAGAGUCGAGa -3'
miRNA:   3'- aGUU-GGUUUGCUUUcAGUCUCAGUUC- -5'
20929 3' -44.4 NC_004690.1 + 23709 0.98 0.138076
Target:  5'- aUCAACCAAACGAAAcUCAGAGUCAAGu -3'
miRNA:   3'- -AGUUGGUUUGCUUUcAGUCUCAGUUC- -5'
20929 3' -44.4 NC_004690.1 + 23799 0.98 0.138076
Target:  5'- aUCAACCAAACGAAAcUCAGAGUCAAGu -3'
miRNA:   3'- -AGUUGGUUUGCUUUcAGUCUCAGUUC- -5'
20929 3' -44.4 NC_004690.1 + 26319 0.98 0.138076
Target:  5'- aUCAACCAAACGAAAcUCAGAGUCAAGu -3'
miRNA:   3'- -AGUUGGUUUGCUUUcAGUCUCAGUUC- -5'
20929 3' -44.4 NC_004690.1 + 95296 0.98 0.138076
Target:  5'- aUCAACCAAACGAAAcUCAGAGUCAAGu -3'
miRNA:   3'- -AGUUGGUUUGCUUUcAGUCUCAGUUC- -5'
20929 3' -44.4 NC_004690.1 + 95386 0.98 0.138076
Target:  5'- aUCAACCAAACGAAAcUCAGAGUCAAGu -3'
miRNA:   3'- -AGUUGGUUUGCUUUcAGUCUCAGUUC- -5'
20929 3' -44.4 NC_004690.1 + 25906 0.98 0.138076
Target:  5'- aUCAACCAAACGAAAcUCAGAGUCAAGu -3'
miRNA:   3'- -AGUUGGUUUGCUUUcAGUCUCAGUUC- -5'
20929 3' -44.4 NC_004690.1 + 25762 1.11 0.023101
Target:  5'- aUCAACCAAACGAAAGUCAGAGUCAAGu -3'
miRNA:   3'- -AGUUGGUUUGCUUUCAGUCUCAGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.