miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20929 5' -45 NC_004690.1 + 23765 0.72 0.98516
Target:  5'- aAUCUcuACUCUGAGUUUGG-UCGGg- -3'
miRNA:   3'- -UAGAacUGAGACUCAAACCaAGUUag -5'
20929 5' -45 NC_004690.1 + 25901 0.74 0.949514
Target:  5'- -aCUUGACUCUGAcuuucGUUUGGUUgauGUCa -3'
miRNA:   3'- uaGAACUGAGACU-----CAAACCAAgu-UAG- -5'
20929 5' -45 NC_004690.1 + 95352 0.75 0.939506
Target:  5'- aAUCUcuACUCUGAGUUUGGUUgGGa- -3'
miRNA:   3'- -UAGAacUGAGACUCAAACCAAgUUag -5'
20929 5' -45 NC_004690.1 + 23443 0.77 0.871601
Target:  5'- aAUCUcGACUCUGAGUUUcGUUCGAg- -3'
miRNA:   3'- -UAGAaCUGAGACUCAAAcCAAGUUag -5'
20929 5' -45 NC_004690.1 + 23570 0.78 0.817647
Target:  5'- -aCUUGACUCUGAGUUUcGUUUggUUg -3'
miRNA:   3'- uaGAACUGAGACUCAAAcCAAGuuAG- -5'
20929 5' -45 NC_004690.1 + 23660 0.78 0.817647
Target:  5'- -aCUUGACUCUGAGUUUcGUUUggUUg -3'
miRNA:   3'- uaGAACUGAGACUCAAAcCAAGuuAG- -5'
20929 5' -45 NC_004690.1 + 26179 0.78 0.817647
Target:  5'- -aCUUGACUCUGAGUUUcGUUUggUUg -3'
miRNA:   3'- uaGAACUGAGACUCAAAcCAAGuuAG- -5'
20929 5' -45 NC_004690.1 + 95157 0.78 0.817647
Target:  5'- -aCUUGACUCUGAGUUUcGUUUggUUg -3'
miRNA:   3'- uaGAACUGAGACUCAAAcCAAGuuAG- -5'
20929 5' -45 NC_004690.1 + 95247 0.78 0.817647
Target:  5'- -aCUUGACUCUGAGUUUcGUUUggUUg -3'
miRNA:   3'- uaGAACUGAGACUCAAAcCAAGuuAG- -5'
20929 5' -45 NC_004690.1 + 26045 0.78 0.817647
Target:  5'- -aCUUGACUCUGAGUUUcGUUUggUUg -3'
miRNA:   3'- uaGAACUGAGACUCAAAcCAAGuuAG- -5'
20929 5' -45 NC_004690.1 + 84840 0.78 0.80785
Target:  5'- aAUCUcGACUCUGAGUUUcguucgGGUUgGAUCa -3'
miRNA:   3'- -UAGAaCUGAGACUCAAA------CCAAgUUAG- -5'
20929 5' -45 NC_004690.1 + 23675 0.85 0.46545
Target:  5'- aAUCUcuACUCUGAGUUUGGUUCAuAUCa -3'
miRNA:   3'- -UAGAacUGAGACUCAAACCAAGU-UAG- -5'
20929 5' -45 NC_004690.1 + 26285 0.86 0.424642
Target:  5'- aAUCUcGACUCUGAGUUUGGUUgGAUa -3'
miRNA:   3'- -UAGAaCUGAGACUCAAACCAAgUUAg -5'
20929 5' -45 NC_004690.1 + 84735 0.9 0.263129
Target:  5'- -aCUUGACUCUGAGUUUGGUUgGAUa -3'
miRNA:   3'- uaGAACUGAGACUCAAACCAAgUUAg -5'
20929 5' -45 NC_004690.1 + 23548 0.9 0.263129
Target:  5'- -aCUUGACUCUGAGUUUGGUUgGAUa -3'
miRNA:   3'- uaGAACUGAGACUCAAACCAAgUUAg -5'
20929 5' -45 NC_004690.1 + 25796 1.1 0.018763
Target:  5'- aAUCUUGACUCUGAGUUUGGUUCAAUCa -3'
miRNA:   3'- -UAGAACUGAGACUCAAACCAAGUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.