miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2093 3' -50.3 NC_001348.1 + 30099 0.66 0.990836
Target:  5'- aCUUACAcaggcuGGACGuGACCCCAUGUAc--- -3'
miRNA:   3'- -GAAUGU------CCUGU-UUGGGGUGCGUugua -5'
2093 3' -50.3 NC_001348.1 + 98555 0.66 0.990836
Target:  5'- -cUAgAGGA--GACCgUACGCGACAUg -3'
miRNA:   3'- gaAUgUCCUguUUGGgGUGCGUUGUA- -5'
2093 3' -50.3 NC_001348.1 + 66743 0.66 0.987988
Target:  5'- --gGCAaGGGCA--UCCCAUGUAGCAa -3'
miRNA:   3'- gaaUGU-CCUGUuuGGGGUGCGUUGUa -5'
2093 3' -50.3 NC_001348.1 + 99326 0.66 0.987988
Target:  5'- cCUUGCAGGuuGggUgCCGCGCuuCAc -3'
miRNA:   3'- -GAAUGUCCugUuuGgGGUGCGuuGUa -5'
2093 3' -50.3 NC_001348.1 + 121617 0.66 0.984497
Target:  5'- cCUgcCGGGA-AGAUCCCACGCAcCAg -3'
miRNA:   3'- -GAauGUCCUgUUUGGGGUGCGUuGUa -5'
2093 3' -50.3 NC_001348.1 + 108175 0.66 0.984497
Target:  5'- cCUgcCGGGA-AGAUCCCACGCAcCAg -3'
miRNA:   3'- -GAauGUCCUgUUUGGGGUGCGUuGUa -5'
2093 3' -50.3 NC_001348.1 + 123829 0.67 0.980284
Target:  5'- --gACGGuuGCAagGACCUCGCGCGACAg -3'
miRNA:   3'- gaaUGUCc-UGU--UUGGGGUGCGUUGUa -5'
2093 3' -50.3 NC_001348.1 + 105962 0.67 0.980284
Target:  5'- --gACGGuuGCAagGACCUCGCGCGACAg -3'
miRNA:   3'- gaaUGUCc-UGU--UUGGGGUGCGUUGUa -5'
2093 3' -50.3 NC_001348.1 + 74266 0.67 0.977883
Target:  5'- -aUGCGGGA---GCCgCCACgGCAACAa -3'
miRNA:   3'- gaAUGUCCUguuUGG-GGUG-CGUUGUa -5'
2093 3' -50.3 NC_001348.1 + 119259 0.67 0.972444
Target:  5'- -----cGGACGAACCCUGCaCAACAa -3'
miRNA:   3'- gaauguCCUGUUUGGGGUGcGUUGUa -5'
2093 3' -50.3 NC_001348.1 + 110533 0.67 0.972444
Target:  5'- -----cGGACGAACCCUGCaCAACAa -3'
miRNA:   3'- gaauguCCUGUUUGGGGUGcGUUGUa -5'
2093 3' -50.3 NC_001348.1 + 123897 0.68 0.950467
Target:  5'- --gGCGGcACAuAGCCaCCGCGCAGCAa -3'
miRNA:   3'- gaaUGUCcUGU-UUGG-GGUGCGUUGUa -5'
2093 3' -50.3 NC_001348.1 + 105895 0.68 0.950467
Target:  5'- --gGCGGcACAuAGCCaCCGCGCAGCAa -3'
miRNA:   3'- gaaUGUCcUGU-UUGG-GGUGCGUUGUa -5'
2093 3' -50.3 NC_001348.1 + 79453 0.69 0.945912
Target:  5'- gCUUugGGGAUugucAACCCgggcauuuauaCACGCAGCAUc -3'
miRNA:   3'- -GAAugUCCUGu---UUGGG-----------GUGCGUUGUA- -5'
2093 3' -50.3 NC_001348.1 + 32295 0.69 0.94109
Target:  5'- --aGCAGGACAAaguGCCgUACGCGAa-- -3'
miRNA:   3'- gaaUGUCCUGUU---UGGgGUGCGUUgua -5'
2093 3' -50.3 NC_001348.1 + 119154 0.7 0.919093
Target:  5'- --gACucGGACGAgucGCCCCGCGUAGCc- -3'
miRNA:   3'- gaaUGu-CCUGUU---UGGGGUGCGUUGua -5'
2093 3' -50.3 NC_001348.1 + 110638 0.7 0.919093
Target:  5'- --gACucGGACGAgucGCCCCGCGUAGCc- -3'
miRNA:   3'- gaaUGu-CCUGUU---UGGGGUGCGUUGua -5'
2093 3' -50.3 NC_001348.1 + 53549 0.7 0.919093
Target:  5'- aUUACGGGugcCAGGCgCCCGCGUGACc- -3'
miRNA:   3'- gAAUGUCCu--GUUUG-GGGUGCGUUGua -5'
2093 3' -50.3 NC_001348.1 + 51319 0.75 0.676112
Target:  5'- --aACAGGA--GGCCCUugGCAGCGUg -3'
miRNA:   3'- gaaUGUCCUguUUGGGGugCGUUGUA- -5'
2093 3' -50.3 NC_001348.1 + 98878 1.06 0.010568
Target:  5'- aCUUACAGGACAAACCCCACGCAACAUu -3'
miRNA:   3'- -GAAUGUCCUGUUUGGGGUGCGUUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.