miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20930 3' -46.8 NC_004690.1 + 25754 0.66 0.999631
Target:  5'- aGUAUgacaUCAACCAAACgaaagUCAGAGUCa-- -3'
miRNA:   3'- gUAUA----GGUUGGUUUG-----AGUCUCAGcuc -5'
20930 3' -46.8 NC_004690.1 + 26319 0.68 0.996532
Target:  5'- ----aUCAACCAaacgaAACUCAGAGUCa-- -3'
miRNA:   3'- guauaGGUUGGU-----UUGAGUCUCAGcuc -5'
20930 3' -46.8 NC_004690.1 + 95296 0.68 0.996532
Target:  5'- ----aUCAACCAaacgaAACUCAGAGUCa-- -3'
miRNA:   3'- guauaGGUUGGU-----UUGAGUCUCAGcuc -5'
20930 3' -46.8 NC_004690.1 + 95386 0.68 0.996532
Target:  5'- ----aUCAACCAaacgaAACUCAGAGUCa-- -3'
miRNA:   3'- guauaGGUUGGU-----UUGAGUCUCAGcuc -5'
20930 3' -46.8 NC_004690.1 + 23799 0.68 0.996532
Target:  5'- ----aUCAACCAaacgaAACUCAGAGUCa-- -3'
miRNA:   3'- guauaGGUUGGU-----UUGAGUCUCAGcuc -5'
20930 3' -46.8 NC_004690.1 + 25906 0.68 0.996532
Target:  5'- ----aUCAACCAaacgaAACUCAGAGUCa-- -3'
miRNA:   3'- guauaGGUUGGU-----UUGAGUCUCAGcuc -5'
20930 3' -46.8 NC_004690.1 + 23709 0.68 0.996532
Target:  5'- ----aUCAACCAaacgaAACUCAGAGUCa-- -3'
miRNA:   3'- guauaGGUUGGU-----UUGAGUCUCAGcuc -5'
20930 3' -46.8 NC_004690.1 + 15588 0.69 0.99516
Target:  5'- aAUGUCaccuaAACgAGACUUGGGGUCGAu -3'
miRNA:   3'- gUAUAGg----UUGgUUUGAGUCUCAGCUc -5'
20930 3' -46.8 NC_004690.1 + 23536 0.72 0.962454
Target:  5'- gAUA-UgAACCAAACUCAGAGUaGAGa -3'
miRNA:   3'- gUAUaGgUUGGUUUGAGUCUCAgCUC- -5'
20930 3' -46.8 NC_004690.1 + 44338 0.72 0.954457
Target:  5'- uGUGUCguCGGCCAGACaaAGAGUCGAa -3'
miRNA:   3'- gUAUAG--GUUGGUUUGagUCUCAGCUc -5'
20930 3' -46.8 NC_004690.1 + 25934 0.77 0.795179
Target:  5'- --gAUUgAACCAAACUCAGAGUCaAGa -3'
miRNA:   3'- guaUAGgUUGGUUUGAGUCUCAGcUC- -5'
20930 3' -46.8 NC_004690.1 + 23586 0.84 0.451769
Target:  5'- aCAUAgcUCgAACgAAACUCAGAGUCGAGa -3'
miRNA:   3'- -GUAU--AGgUUGgUUUGAGUCUCAGCUC- -5'
20930 3' -46.8 NC_004690.1 + 84696 0.89 0.25867
Target:  5'- --gAUCCAACCcgaacgAAACUCAGAGUCGAGa -3'
miRNA:   3'- guaUAGGUUGG------UUUGAGUCUCAGCUC- -5'
20930 3' -46.8 NC_004690.1 + 23623 0.89 0.245502
Target:  5'- cCAUAUcCCGACCAAACUCAGAGUaGAGa -3'
miRNA:   3'- -GUAUA-GGUUGGUUUGAGUCUCAgCUC- -5'
20930 3' -46.8 NC_004690.1 + 26082 0.89 0.245502
Target:  5'- cCAUAUcCCGACCAAACUCAGAGUaGAGa -3'
miRNA:   3'- -GUAUA-GGUUGGUUUGAGUCUCAgCUC- -5'
20930 3' -46.8 NC_004690.1 + 95210 0.9 0.226798
Target:  5'- cCAUAUcCCAACCAAACUCAGAGUaGAGa -3'
miRNA:   3'- -GUAUA-GGUUGGUUUGAGUCUCAgCUC- -5'
20930 3' -46.8 NC_004690.1 + 84874 0.98 0.080375
Target:  5'- cCAUAUCCAACCAAACUCAGAGUCa-- -3'
miRNA:   3'- -GUAUAGGUUGGUUUGAGUCUCAGcuc -5'
20930 3' -46.8 NC_004690.1 + 23409 0.98 0.080375
Target:  5'- cCAUAUCCAACCAAACUCAGAGUCa-- -3'
miRNA:   3'- -GUAUAGGUUGGUUUGAGUCUCAGcuc -5'
20930 3' -46.8 NC_004690.1 + 26143 1.11 0.0135
Target:  5'- cCAUAUCCAACCAAACUCAGAGUCGAGa -3'
miRNA:   3'- -GUAUAGGUUGGUUUGAGUCUCAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.