miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20930 5' -46.2 NC_004690.1 + 23448 0.69 0.994055
Target:  5'- ----cGACUCUGAGUUUCGUUc---- -3'
miRNA:   3'- cugaaCUGAGACUCAAAGCAAaccaa -5'
20930 5' -46.2 NC_004690.1 + 25798 0.69 0.994055
Target:  5'- -uCUUGACUCUGAGUUUgGUUc---- -3'
miRNA:   3'- cuGAACUGAGACUCAAAgCAAaccaa -5'
20930 5' -46.2 NC_004690.1 + 26280 0.7 0.989222
Target:  5'- ----cGACUCUGAGUUUgGUUggauaUGGUg -3'
miRNA:   3'- cugaaCUGAGACUCAAAgCAA-----ACCAa -5'
20930 5' -46.2 NC_004690.1 + 84835 0.8 0.631772
Target:  5'- ----cGACUCUGAGUUUCGUUcgGGUUg -3'
miRNA:   3'- cugaaCUGAGACUCAAAGCAAa-CCAA- -5'
20930 5' -46.2 NC_004690.1 + 84733 0.83 0.477248
Target:  5'- uGACUUGACUCUGAGUUUgG-UUGGa- -3'
miRNA:   3'- -CUGAACUGAGACUCAAAgCaAACCaa -5'
20930 5' -46.2 NC_004690.1 + 23550 0.83 0.477248
Target:  5'- uGACUUGACUCUGAGUUUgG-UUGGa- -3'
miRNA:   3'- -CUGAACUGAGACUCAAAgCaAACCaa -5'
20930 5' -46.2 NC_004690.1 + 25903 0.94 0.141142
Target:  5'- uGACUUGACUCUGAcUUUCGUUUGGUUg -3'
miRNA:   3'- -CUGAACUGAGACUcAAAGCAAACCAA- -5'
20930 5' -46.2 NC_004690.1 + 23568 1.07 0.023615
Target:  5'- uGACUUGACUCUGAGUUUCGUUUGGUUg -3'
miRNA:   3'- -CUGAACUGAGACUCAAAGCAAACCAA- -5'
20930 5' -46.2 NC_004690.1 + 23658 1.07 0.023615
Target:  5'- uGACUUGACUCUGAGUUUCGUUUGGUUg -3'
miRNA:   3'- -CUGAACUGAGACUCAAAGCAAACCAA- -5'
20930 5' -46.2 NC_004690.1 + 26177 1.07 0.023615
Target:  5'- uGACUUGACUCUGAGUUUCGUUUGGUUg -3'
miRNA:   3'- -CUGAACUGAGACUCAAAGCAAACCAA- -5'
20930 5' -46.2 NC_004690.1 + 95155 1.07 0.023615
Target:  5'- uGACUUGACUCUGAGUUUCGUUUGGUUg -3'
miRNA:   3'- -CUGAACUGAGACUCAAAGCAAACCAA- -5'
20930 5' -46.2 NC_004690.1 + 95245 1.07 0.023615
Target:  5'- uGACUUGACUCUGAGUUUCGUUUGGUUg -3'
miRNA:   3'- -CUGAACUGAGACUCAAAGCAAACCAA- -5'
20930 5' -46.2 NC_004690.1 + 26047 1.07 0.023615
Target:  5'- uGACUUGACUCUGAGUUUCGUUUGGUUg -3'
miRNA:   3'- -CUGAACUGAGACUCAAAGCAAACCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.