miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20931 3' -49.4 NC_004690.1 + 27168 0.67 0.991738
Target:  5'- uCAAUCUGAugGcaauGAAgUCAGAccGUCGAGa -3'
miRNA:   3'- -GUUGGGCUugC----UUUgAGUCU--CAGCUC- -5'
20931 3' -49.4 NC_004690.1 + 26082 0.67 0.989128
Target:  5'- cCAuauCCCG-ACcAAACUCAGAGUaGAGa -3'
miRNA:   3'- -GUu--GGGCuUGcUUUGAGUCUCAgCUC- -5'
20931 3' -49.4 NC_004690.1 + 23623 0.67 0.989128
Target:  5'- cCAuauCCCG-ACcAAACUCAGAGUaGAGa -3'
miRNA:   3'- -GUu--GGGCuUGcUUUGAGUCUCAgCUC- -5'
20931 3' -49.4 NC_004690.1 + 25763 0.7 0.940509
Target:  5'- uCAACCa-AACGAAAgUCAGAGUCa-- -3'
miRNA:   3'- -GUUGGgcUUGCUUUgAGUCUCAGcuc -5'
20931 3' -49.4 NC_004690.1 + 26146 0.74 0.828155
Target:  5'- -uAUCC-AACcAAACUCAGAGUCGAGa -3'
miRNA:   3'- guUGGGcUUGcUUUGAGUCUCAGCUC- -5'
20931 3' -49.4 NC_004690.1 + 15583 0.75 0.771397
Target:  5'- -cACCUaAACGAGACUUGGGGUCGAu -3'
miRNA:   3'- guUGGGcUUGCUUUGAGUCUCAGCUc -5'
20931 3' -49.4 NC_004690.1 + 25907 0.78 0.5911
Target:  5'- uCAACCa-AACGAAACUCAGAGUCa-- -3'
miRNA:   3'- -GUUGGgcUUGCUUUGAGUCUCAGcuc -5'
20931 3' -49.4 NC_004690.1 + 23708 0.78 0.5911
Target:  5'- uCAACCa-AACGAAACUCAGAGUCa-- -3'
miRNA:   3'- -GUUGGgcUUGCUUUGAGUCUCAGcuc -5'
20931 3' -49.4 NC_004690.1 + 95385 0.78 0.5911
Target:  5'- uCAACCa-AACGAAACUCAGAGUCa-- -3'
miRNA:   3'- -GUUGGgcUUGCUUUGAGUCUCAGcuc -5'
20931 3' -49.4 NC_004690.1 + 95295 0.78 0.5911
Target:  5'- uCAACCa-AACGAAACUCAGAGUCa-- -3'
miRNA:   3'- -GUUGGgcUUGCUUUGAGUCUCAGcuc -5'
20931 3' -49.4 NC_004690.1 + 26318 0.78 0.5911
Target:  5'- uCAACCa-AACGAAACUCAGAGUCa-- -3'
miRNA:   3'- -GUUGGgcUUGCUUUGAGUCUCAGcuc -5'
20931 3' -49.4 NC_004690.1 + 23798 0.78 0.5911
Target:  5'- uCAACCa-AACGAAACUCAGAGUCa-- -3'
miRNA:   3'- -GUUGGgcUUGCUUUGAGUCUCAGcuc -5'
20931 3' -49.4 NC_004690.1 + 23495 0.83 0.364981
Target:  5'- gCAACCCGAACGAAAUUCAGAG-Ca-- -3'
miRNA:   3'- -GUUGGGCUUGCUUUGAGUCUCaGcuc -5'
20931 3' -49.4 NC_004690.1 + 23584 1.02 0.028888
Target:  5'- aUAGCUCGAACGAAACUCAGAGUCGAGa -3'
miRNA:   3'- -GUUGGGCUUGCUUUGAGUCUCAGCUC- -5'
20931 3' -49.4 NC_004690.1 + 84699 1.1 0.00872
Target:  5'- cCAACCCGAACGAAACUCAGAGUCGAGa -3'
miRNA:   3'- -GUUGGGCUUGCUUUGAGUCUCAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.