miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20931 5' -47.1 NC_004690.1 + 84835 0.74 0.884655
Target:  5'- ----cGACUCUGAGUUUcguucgGGUUGGAUc -3'
miRNA:   3'- cugaaCUGAGACUCAAA------CCAACCUAu -5'
20931 5' -47.1 NC_004690.1 + 23763 0.74 0.876869
Target:  5'- -uCUcuACUCUGAGUUUGGUcgGGAUAu -3'
miRNA:   3'- cuGAacUGAGACUCAAACCAa-CCUAU- -5'
20931 5' -47.1 NC_004690.1 + 25798 0.77 0.744003
Target:  5'- -uCUUGACUCUGAGUUUGGUUc---- -3'
miRNA:   3'- cuGAACUGAGACUCAAACCAAccuau -5'
20931 5' -47.1 NC_004690.1 + 95350 0.77 0.722358
Target:  5'- -uCUcuACUCUGAGUUUGGUUGGGa- -3'
miRNA:   3'- cuGAacUGAGACUCAAACCAACCUau -5'
20931 5' -47.1 NC_004690.1 + 25903 0.79 0.64426
Target:  5'- uGACUUGACUCUGAcuuucGUUUGGUUGa--- -3'
miRNA:   3'- -CUGAACUGAGACU-----CAAACCAACcuau -5'
20931 5' -47.1 NC_004690.1 + 23568 0.81 0.510796
Target:  5'- uGACUUGACUCUGAGUuucguUUGGUUGa--- -3'
miRNA:   3'- -CUGAACUGAGACUCA-----AACCAACcuau -5'
20931 5' -47.1 NC_004690.1 + 23658 0.81 0.510796
Target:  5'- uGACUUGACUCUGAGUuucguUUGGUUGa--- -3'
miRNA:   3'- -CUGAACUGAGACUCA-----AACCAACcuau -5'
20931 5' -47.1 NC_004690.1 + 26177 0.81 0.510796
Target:  5'- uGACUUGACUCUGAGUuucguUUGGUUGa--- -3'
miRNA:   3'- -CUGAACUGAGACUCA-----AACCAACcuau -5'
20931 5' -47.1 NC_004690.1 + 95155 0.81 0.510796
Target:  5'- uGACUUGACUCUGAGUuucguUUGGUUGa--- -3'
miRNA:   3'- -CUGAACUGAGACUCA-----AACCAACcuau -5'
20931 5' -47.1 NC_004690.1 + 95245 0.81 0.510796
Target:  5'- uGACUUGACUCUGAGUuucguUUGGUUGa--- -3'
miRNA:   3'- -CUGAACUGAGACUCA-----AACCAACcuau -5'
20931 5' -47.1 NC_004690.1 + 26047 0.81 0.510796
Target:  5'- uGACUUGACUCUGAGUuucguUUGGUUGa--- -3'
miRNA:   3'- -CUGAACUGAGACUCA-----AACCAACcuau -5'
20931 5' -47.1 NC_004690.1 + 26280 0.91 0.164336
Target:  5'- ----cGACUCUGAGUUUGGUUGGAUAu -3'
miRNA:   3'- cugaaCUGAGACUCAAACCAACCUAU- -5'
20931 5' -47.1 NC_004690.1 + 84733 1.07 0.016732
Target:  5'- uGACUUGACUCUGAGUUUGGUUGGAUAu -3'
miRNA:   3'- -CUGAACUGAGACUCAAACCAACCUAU- -5'
20931 5' -47.1 NC_004690.1 + 23550 1.07 0.016732
Target:  5'- uGACUUGACUCUGAGUUUGGUUGGAUAu -3'
miRNA:   3'- -CUGAACUGAGACUCAAACCAACCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.