miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20948 5' -47.1 NC_004718.3 + 8903 0.66 0.948022
Target:  5'- aGUGAUuuUGCUACCucuGCUugcguucuuGCUGCUGAg -3'
miRNA:   3'- -CGUUAuuAUGGUGGu--CGG---------UGAUGACU- -5'
20948 5' -47.1 NC_004718.3 + 23988 0.66 0.924743
Target:  5'- aCAGUGuUGCCACCucuGCuCACUGaUGAu -3'
miRNA:   3'- cGUUAUuAUGGUGGu--CG-GUGAUgACU- -5'
20948 5' -47.1 NC_004718.3 + 24046 0.67 0.911039
Target:  5'- uUAGUGGUACU----GCCACUGCUGGa -3'
miRNA:   3'- cGUUAUUAUGGugguCGGUGAUGACU- -5'
20948 5' -47.1 NC_004718.3 + 10591 0.69 0.843045
Target:  5'- -----uGUACCugCAGCCugUGCa-- -3'
miRNA:   3'- cguuauUAUGGugGUCGGugAUGacu -5'
20948 5' -47.1 NC_004718.3 + 1255 0.7 0.779134
Target:  5'- gGCAGacGUGCgACUuucugaaAGCCACUugUGAa -3'
miRNA:   3'- -CGUUauUAUGgUGG-------UCGGUGAugACU- -5'
20948 5' -47.1 NC_004718.3 + 12645 0.76 0.415833
Target:  5'- uGCGGcUGGUACCACacaaaCAGCUugUACUGAu -3'
miRNA:   3'- -CGUU-AUUAUGGUG-----GUCGGugAUGACU- -5'
20948 5' -47.1 NC_004718.3 + 4149 0.77 0.375177
Target:  5'- uCAGUAGUGCCACCAGCCuuuUUGgaGGg -3'
miRNA:   3'- cGUUAUUAUGGUGGUCGGu--GAUgaCU- -5'
20948 5' -47.1 NC_004718.3 + 9377 1.13 0.00171
Target:  5'- gGCAAUAAUACCACCAGCCACUACUGAa -3'
miRNA:   3'- -CGUUAUUAUGGUGGUCGGUGAUGACU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.