Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2096 | 3' | -56.7 | NC_001348.1 | + | 105815 | 0.67 | 0.794718 |
Target: 5'- gACCGgGggCCGccGgGCCGGaGGCCGGCg -3' miRNA: 3'- gUGGCgCa-GGU--UgUGGUCgUUGGCCG- -5' |
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2096 | 3' | -56.7 | NC_001348.1 | + | 32563 | 0.67 | 0.82129 |
Target: 5'- gACaGCuUCCAAC-CCuGUAGCCGGUg -3' miRNA: 3'- gUGgCGcAGGUUGuGGuCGUUGGCCG- -5' |
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2096 | 3' | -56.7 | NC_001348.1 | + | 84579 | 0.66 | 0.829811 |
Target: 5'- gCACUGCGU--GACACUGGaauauCCGGCg -3' miRNA: 3'- -GUGGCGCAggUUGUGGUCguu--GGCCG- -5' |
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2096 | 3' | -56.7 | NC_001348.1 | + | 107351 | 0.66 | 0.854252 |
Target: 5'- gGCCGCGgCCGugGCUaugAGCcgucgauacGACCGGg -3' miRNA: 3'- gUGGCGCaGGUugUGG---UCG---------UUGGCCg -5' |
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2096 | 3' | -56.7 | NC_001348.1 | + | 71315 | 0.68 | 0.718005 |
Target: 5'- aACUGcCG-CCAuUACCAGUAACaCGGCu -3' miRNA: 3'- gUGGC-GCaGGUuGUGGUCGUUG-GCCG- -5' |
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2096 | 3' | -56.7 | NC_001348.1 | + | 124250 | 0.68 | 0.718005 |
Target: 5'- cCGCCGaCGcauaCAGCGCCAccgacCGACCGGCc -3' miRNA: 3'- -GUGGC-GCag--GUUGUGGUc----GUUGGCCG- -5' |
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2096 | 3' | -56.7 | NC_001348.1 | + | 120854 | 0.71 | 0.585187 |
Target: 5'- gGCCGCGUCCAACAgguCCAuUAACUccaaaguaucaGGCg -3' miRNA: 3'- gUGGCGCAGGUUGU---GGUcGUUGG-----------CCG- -5' |
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2096 | 3' | -56.7 | NC_001348.1 | + | 106215 | 0.7 | 0.605668 |
Target: 5'- gGCCGuCGUCCgAugGCCAGac-UCGGCg -3' miRNA: 3'- gUGGC-GCAGG-UugUGGUCguuGGCCG- -5' |
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2096 | 3' | -56.7 | NC_001348.1 | + | 3670 | 0.69 | 0.687755 |
Target: 5'- cCACCGCGggagCCAGCgugACCAuuGACuCGGUa -3' miRNA: 3'- -GUGGCGCa---GGUUG---UGGUcgUUG-GCCG- -5' |
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2096 | 3' | -56.7 | NC_001348.1 | + | 123704 | 0.68 | 0.727953 |
Target: 5'- gGCCuggGCGUCCGgucGCGCCGGgGcCCGGa -3' miRNA: 3'- gUGG---CGCAGGU---UGUGGUCgUuGGCCg -5' |
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2096 | 3' | -56.7 | NC_001348.1 | + | 106349 | 0.67 | 0.792897 |
Target: 5'- gGCuCGCGguuggccucugcCCGGCGCCGGUuGCUGGUg -3' miRNA: 3'- gUG-GCGCa-----------GGUUGUGGUCGuUGGCCG- -5' |
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2096 | 3' | -56.7 | NC_001348.1 | + | 106015 | 0.72 | 0.528735 |
Target: 5'- -cCCGCGUCCcccugucgccccgugAAUACCGGCAguacgugcuGCCGGg -3' miRNA: 3'- guGGCGCAGG---------------UUGUGGUCGU---------UGGCCg -5' |
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2096 | 3' | -56.7 | NC_001348.1 | + | 124131 | 0.67 | 0.785553 |
Target: 5'- uCGCCgGCcUCCGGC-CCGGCGGCCcccGGUc -3' miRNA: 3'- -GUGG-CGcAGGUUGuGGUCGUUGG---CCG- -5' |
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2096 | 3' | -56.7 | NC_001348.1 | + | 20690 | 0.7 | 0.646807 |
Target: 5'- uUACaUGCGUCUAACgACCGGaCAACaGGCg -3' miRNA: 3'- -GUG-GCGCAGGUUG-UGGUC-GUUGgCCG- -5' |
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2096 | 3' | -56.7 | NC_001348.1 | + | 123618 | 1.12 | 0.001298 |
Target: 5'- cCACCGCGUCCAACACCAGCAACCGGCg -3' miRNA: 3'- -GUGGCGCAGGUUGUGGUCGUUGGCCG- -5' |
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2096 | 3' | -56.7 | NC_001348.1 | + | 124350 | 0.67 | 0.809955 |
Target: 5'- aACCGUGuuccgucgcuccccUCCAACACCGucuccGCGGCCccaaaaccgGGCg -3' miRNA: 3'- gUGGCGC--------------AGGUUGUGGU-----CGUUGG---------CCG- -5' |
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2096 | 3' | -56.7 | NC_001348.1 | + | 72390 | 0.66 | 0.846299 |
Target: 5'- aCACCGcCG-CUGACguACCAGUAACauauGGCg -3' miRNA: 3'- -GUGGC-GCaGGUUG--UGGUCGUUGg---CCG- -5' |
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2096 | 3' | -56.7 | NC_001348.1 | + | 105442 | 0.67 | 0.809955 |
Target: 5'- aACCGUGuuccgucgcuccccUCCAACACCGucuccGCGGCCccaaaaccgGGCg -3' miRNA: 3'- gUGGCGC--------------AGGUUGUGGU-----CGUUGG---------CCG- -5' |
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2096 | 3' | -56.7 | NC_001348.1 | + | 123977 | 0.67 | 0.794718 |
Target: 5'- gACCGgGggCCGccGgGCCGGaGGCCGGCg -3' miRNA: 3'- gUGGCgCa-GGU--UgUGGUCgUUGGCCG- -5' |
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2096 | 3' | -56.7 | NC_001348.1 | + | 123443 | 0.67 | 0.792897 |
Target: 5'- gGCuCGCGguuggccucugcCCGGCGCCGGUuGCUGGUg -3' miRNA: 3'- gUG-GCGCa-----------GGUUGUGGUCGuUGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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