miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
20985	3'	-63.2	NC_004735.1	+	103436	0.66	0.599133
	Target:  5'- aCgGCgGCUCCgauCAgCGGAGUCAGcCCCu -3' miRNA:   3'- -GgCG-CGAGG---GUgGCCUCGGUCuGGGc -5'
20985	3'	-63.2	NC_004735.1	+	10046	0.66	0.551006
	Target:  5'- aUC-CGUUCCCACCGGuacaaccgGGUCAGACUUu -3' miRNA:   3'- -GGcGCGAGGGUGGCC--------UCGGUCUGGGc -5'
20985	3'	-63.2	NC_004735.1	+	56924	0.66	0.548152
	Target:  5'- aCGCGCcaucauaccguauaUCCCGUCaGGAGCCGGAUCg- -3' miRNA:   3'- gGCGCG--------------AGGGUGG-CCUCGGUCUGGgc -5'
20985	3'	-63.2	NC_004735.1	+	117039	0.67	0.532069
	Target:  5'- cCCGUGaUCCCGcaaaucCCGGuGCCGGAUUCa -3' miRNA:   3'- -GGCGCgAGGGU------GGCCuCGGUCUGGGc -5'
20985	3'	-63.2	NC_004735.1	+	126529	0.71	0.33115
	Target:  5'- uCCGCGCUacaACCGGAucGUCGGugCCGu -3' miRNA:   3'- -GGCGCGAgggUGGCCU--CGGUCugGGC- -5'
20985	3'	-63.2	NC_004735.1	+	1074	0.76	0.143592
	Target:  5'- aCGCGCUUCCACUGGuGCUugacGAUCCGg -3' miRNA:   3'- gGCGCGAGGGUGGCCuCGGu---CUGGGC- -5'
20985	3'	-63.2	NC_004735.1	+	29129	0.98	0.004331
	Target:  5'- gCCGCGCUCCCACCGGAG-CAGACCCGu -3' miRNA:   3'- -GGCGCGAGGGUGGCCUCgGUCUGGGC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home