miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20986 5' -50.6 NC_004735.1 + 25469 0.66 0.988151
Target:  5'- -gUGAAgcUUGCCgAAGAGGu-GAGCGGGa -3'
miRNA:   3'- uaGCUU--AGCGG-UUCUCCuuCUUGCCU- -5'
20986 5' -50.6 NC_004735.1 + 52874 0.66 0.986531
Target:  5'- uAUCGAAUCGgCu-GAGGAAauGCGGu -3'
miRNA:   3'- -UAGCUUAGCgGuuCUCCUUcuUGCCu -5'
20986 5' -50.6 NC_004735.1 + 73788 0.67 0.980647
Target:  5'- uUCGGugCGCCcgucGGGAAGAAUGGAc -3'
miRNA:   3'- uAGCUuaGCGGuuc-UCCUUCUUGCCU- -5'
20986 5' -50.6 NC_004735.1 + 34317 0.67 0.980647
Target:  5'- -aCGAucucaagCcCCAGGAGGAAGuGGCGGAa -3'
miRNA:   3'- uaGCUua-----GcGGUUCUCCUUC-UUGCCU- -5'
20986 5' -50.6 NC_004735.1 + 11442 0.68 0.959776
Target:  5'- uUUGGAUCGCUGacGGuGGAAGAGCuGAg -3'
miRNA:   3'- uAGCUUAGCGGU--UCuCCUUCUUGcCU- -5'
20986 5' -50.6 NC_004735.1 + 11853 0.72 0.849855
Target:  5'- aAUUGggUucCGCCAccaucguuugcgGGuGGAAGAACGGAu -3'
miRNA:   3'- -UAGCuuA--GCGGU------------UCuCCUUCUUGCCU- -5'
20986 5' -50.6 NC_004735.1 + 34199 1.08 0.008851
Target:  5'- gAUCGAAUCGCCAAGAGGAAGAACGGAa -3'
miRNA:   3'- -UAGCUUAGCGGUUCUCCUUCUUGCCU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.