miRNA: 3'- -GGUGGc---CUA----UGCCCAUCUGcCCaCAG- -5'
miRNA: 3'- gGUGGCcUAUGCCCa-UCuGCCCACag -5'
miRNA: 3'- -GGU-GGCCUAUg----CCcAUCugCCCACAG- -5'
miRNA: 3'- -GGUGGCC------------UAUGCCCAuCUGCCCaCaG- -5'
miRNA: 3'- -GGUGGCCUAUGCCCAUCUGCCCACAG- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 20988 | 3' | -55.7 | NC_004735.1 | + | 44985 | 0.66 | 0.923166 |
|
Target: 5'- cCCACCugaaGAUgagcACGGGUGGAUuGGcGUCg -3' miRNA: 3'- -GGUGGc---CUA----UGCCCAUCUGcCCaCAG- -5' |
|||||||
| 20988 | 3' | -55.7 | NC_004735.1 | + | 127392 | 0.67 | 0.886117 |
|
Target: 5'- gCGCCGuAUGCGGGaaAGcCGGGUGa- -3' miRNA: 3'- gGUGGCcUAUGCCCa-UCuGCCCACag -5' |
|||||||
| 20988 | 3' | -55.7 | NC_004735.1 | + | 16180 | 0.7 | 0.732467 |
|
Target: 5'- gCCAuUCGGGUGguggaGGaUAGugGGGUGUCg -3' miRNA: 3'- -GGU-GGCCUAUg----CCcAUCugCCCACAG- -5' |
|||||||
| 20988 | 3' | -55.7 | NC_004735.1 | + | 38595 | 0.74 | 0.501691 |
|
Target: 5'- uCCGCCGGcggggcuuuaagGUACGGGUcGACGGGcGcCa -3' miRNA: 3'- -GGUGGCC------------UAUGCCCAuCUGCCCaCaG- -5' |
|||||||
| 20988 | 3' | -55.7 | NC_004735.1 | + | 38802 | 1.11 | 0.002356 |
|
Target: 5'- uCCACCGGAUACGGGUAGACGGGUGUCu -3' miRNA: 3'- -GGUGGCCUAUGCCCAUCUGCCCACAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home