miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20989 3' -52 NC_004735.1 + 58355 0.66 0.981394
Target:  5'- -cGAACACCCGcUUugcgcgggguaaaGUGUGGuAUCGGGUa -3'
miRNA:   3'- gcUUUGUGGGC-AG-------------UACGCC-UAGCUCG- -5'
20989 3' -52 NC_004735.1 + 35518 0.66 0.979415
Target:  5'- ----cCACCCGUUugcgacaGCGGGguaugCGAGCa -3'
miRNA:   3'- gcuuuGUGGGCAGua-----CGCCUa----GCUCG- -5'
20989 3' -52 NC_004735.1 + 29884 0.66 0.977038
Target:  5'- gGAAAUACCCGUauggAUGUGGcauUCcAGCu -3'
miRNA:   3'- gCUUUGUGGGCAg---UACGCCu--AGcUCG- -5'
20989 3' -52 NC_004735.1 + 127124 0.66 0.977038
Target:  5'- cCGA---ACCCGaCGUGCGGGauUCG-GCg -3'
miRNA:   3'- -GCUuugUGGGCaGUACGCCU--AGCuCG- -5'
20989 3' -52 NC_004735.1 + 11350 0.66 0.97679
Target:  5'- aGAAACACCCGcuccaguUCAUa-GGAUCGAc- -3'
miRNA:   3'- gCUUUGUGGGC-------AGUAcgCCUAGCUcg -5'
20989 3' -52 NC_004735.1 + 109996 0.67 0.971689
Target:  5'- cCGGAAgAUCCaUCGUGCaGAUUGAGa -3'
miRNA:   3'- -GCUUUgUGGGcAGUACGcCUAGCUCg -5'
20989 3' -52 NC_004735.1 + 27207 0.68 0.941386
Target:  5'- aGAAACGCCUuuuccUCAUGCaGAUCGAc- -3'
miRNA:   3'- gCUUUGUGGGc----AGUACGcCUAGCUcg -5'
20989 3' -52 NC_004735.1 + 45480 0.69 0.926021
Target:  5'- uGu--CugCCGcUCGUGCGGAUUGgaAGCg -3'
miRNA:   3'- gCuuuGugGGC-AGUACGCCUAGC--UCG- -5'
20989 3' -52 NC_004735.1 + 13752 0.69 0.920396
Target:  5'- gCGAAgacGCACCUGaaaCAUG-GGAUCGuGCg -3'
miRNA:   3'- -GCUU---UGUGGGCa--GUACgCCUAGCuCG- -5'
20989 3' -52 NC_004735.1 + 48177 0.71 0.866551
Target:  5'- aGAGACGuagucuUUCGUCAUGguaGGGUUGAGCg -3'
miRNA:   3'- gCUUUGU------GGGCAGUACg--CCUAGCUCG- -5'
20989 3' -52 NC_004735.1 + 46054 0.71 0.858769
Target:  5'- gGAAAC-CCCGUaCAUGUcgGGAUCGAu- -3'
miRNA:   3'- gCUUUGuGGGCA-GUACG--CCUAGCUcg -5'
20989 3' -52 NC_004735.1 + 29117 0.71 0.850771
Target:  5'- cCGGAGCagACCCGUCuc-CGGAUCGGugguGCg -3'
miRNA:   3'- -GCUUUG--UGGGCAGuacGCCUAGCU----CG- -5'
20989 3' -52 NC_004735.1 + 116699 0.73 0.779952
Target:  5'- aGAAcggcuGCACCUGg-GUGCGGAUCgGAGUa -3'
miRNA:   3'- gCUU-----UGUGGGCagUACGCCUAG-CUCG- -5'
20989 3' -52 NC_004735.1 + 39187 1.13 0.003988
Target:  5'- cCGAAACACCCGUCAUGCGGAUCGAGCu -3'
miRNA:   3'- -GCUUUGUGGGCAGUACGCCUAGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.