miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20990 5' -47.6 NC_004735.1 + 12232 0.66 0.999188
Target:  5'- gGCGCAC---CAGUaCGUGGAGAAGu- -3'
miRNA:   3'- -CGCGUGuuuGUCGcGCAUUUCUUCuu -5'
20990 5' -47.6 NC_004735.1 + 127529 0.66 0.999188
Target:  5'- aGCG-AgGAGCAuGUGCGUGAAGAaauGGAu -3'
miRNA:   3'- -CGCgUgUUUGU-CGCGCAUUUCU---UCUu -5'
20990 5' -47.6 NC_004735.1 + 99916 0.66 0.998495
Target:  5'- cGCGUugAuagcucagacAGCAGCGgGUGcuGGAGAc -3'
miRNA:   3'- -CGCGugU----------UUGUCGCgCAUuuCUUCUu -5'
20990 5' -47.6 NC_004735.1 + 58683 0.67 0.998173
Target:  5'- aGCGcCACAGGCGGUG-GUAuaucuuccGGGAGAAa -3'
miRNA:   3'- -CGC-GUGUUUGUCGCgCAUu-------UCUUCUU- -5'
20990 5' -47.6 NC_004735.1 + 20489 0.69 0.990518
Target:  5'- aGUGCGggUAAGCAGCGC---AAGAAGAu -3'
miRNA:   3'- -CGCGU--GUUUGUCGCGcauUUCUUCUu -5'
20990 5' -47.6 NC_004735.1 + 128365 0.73 0.927283
Target:  5'- uUGCGCGA--GGCGCuuGUGAAGAAGAAa -3'
miRNA:   3'- cGCGUGUUugUCGCG--CAUUUCUUCUU- -5'
20990 5' -47.6 NC_004735.1 + 38682 0.73 0.91518
Target:  5'- -aGCGCAAGgGGgGCGUAuAGGAAGAc -3'
miRNA:   3'- cgCGUGUUUgUCgCGCAU-UUCUUCUu -5'
20990 5' -47.6 NC_004735.1 + 92020 0.75 0.829423
Target:  5'- -aGCAgAAGCAGCaGCGggagGAGGAAGAAg -3'
miRNA:   3'- cgCGUgUUUGUCG-CGCa---UUUCUUCUU- -5'
20990 5' -47.6 NC_004735.1 + 127496 0.76 0.781331
Target:  5'- uUGCACAcGCuucuugAGCGCGUAGAGGAGGc -3'
miRNA:   3'- cGCGUGUuUG------UCGCGCAUUUCUUCUu -5'
20990 5' -47.6 NC_004735.1 + 39835 0.81 0.520617
Target:  5'- uGCGCAUgcugAAGCAaaauGCGCGUGAGGAAGAu -3'
miRNA:   3'- -CGCGUG----UUUGU----CGCGCAUUUCUUCUu -5'
20990 5' -47.6 NC_004735.1 + 39969 1.09 0.014275
Target:  5'- uGCGCACAAACAGCGCGUAAAGAAGAAc -3'
miRNA:   3'- -CGCGUGUUUGUCGCGCAUUUCUUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.