miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20994 3' -50.7 NC_004735.1 + 126362 0.66 0.991672
Target:  5'- -cGGAUCCUgacuaUCCGGAucCCGGaUUCCa -3'
miRNA:   3'- gaCCUAGGA-----AGGUCUu-GGUUaGAGGg -5'
20994 3' -50.7 NC_004735.1 + 72228 0.66 0.990448
Target:  5'- gUGGGUCCagaCGGAAUCAAUaUUCUCa -3'
miRNA:   3'- gACCUAGGaagGUCUUGGUUA-GAGGG- -5'
20994 3' -50.7 NC_004735.1 + 129565 0.66 0.987578
Target:  5'- aUGGAcgUCuCUUCCAccaacaaaacGAACU--UCUCCCg -3'
miRNA:   3'- gACCU--AG-GAAGGU----------CUUGGuuAGAGGG- -5'
20994 3' -50.7 NC_004735.1 + 1165 0.67 0.984837
Target:  5'- cCUGGAUaCCUcccaccgucauauaaUCCAGAAauCUGAUCguaCCCg -3'
miRNA:   3'- -GACCUA-GGA---------------AGGUCUU--GGUUAGa--GGG- -5'
20994 3' -50.7 NC_004735.1 + 116640 0.67 0.984085
Target:  5'- gCUGGAUCCaaCCGGAuucCCGAUugacagcaaucCUCCg -3'
miRNA:   3'- -GACCUAGGaaGGUCUu--GGUUA-----------GAGGg -5'
20994 3' -50.7 NC_004735.1 + 45919 0.67 0.984085
Target:  5'- gCUGGAaaaUCUUaCCAGAAgaCGAUC-CCCa -3'
miRNA:   3'- -GACCU---AGGAaGGUCUUg-GUUAGaGGG- -5'
20994 3' -50.7 NC_004735.1 + 16191 0.67 0.979892
Target:  5'- -gGGGucUCCUUCCAGAuCUucgCUCCa -3'
miRNA:   3'- gaCCU--AGGAAGGUCUuGGuuaGAGGg -5'
20994 3' -50.7 NC_004735.1 + 113820 0.67 0.97751
Target:  5'- gCUGGAagaagaacuUCUuaacagaaaaaUUCCGGuAGgCAAUCUCCCg -3'
miRNA:   3'- -GACCU---------AGG-----------AAGGUC-UUgGUUAGAGGG- -5'
20994 3' -50.7 NC_004735.1 + 48593 0.67 0.977261
Target:  5'- -cGGGU-CUUCCAGAgaaaucuuucuACCGAaaagcaaaugcacUCUCCCc -3'
miRNA:   3'- gaCCUAgGAAGGUCU-----------UGGUU-------------AGAGGG- -5'
20994 3' -50.7 NC_004735.1 + 107617 0.68 0.972135
Target:  5'- uUGGAUCaaUCCAGAu--GGUUUCCCu -3'
miRNA:   3'- gACCUAGgaAGGUCUuggUUAGAGGG- -5'
20994 3' -50.7 NC_004735.1 + 89832 0.69 0.950578
Target:  5'- uCUGGAUUCc-CCaAGcACCAGaUCUCCCg -3'
miRNA:   3'- -GACCUAGGaaGG-UCuUGGUU-AGAGGG- -5'
20994 3' -50.7 NC_004735.1 + 58642 0.73 0.789685
Target:  5'- gUGGAUUCcgCCGGAaaugaaauggugguuACCGGUCUUCCa -3'
miRNA:   3'- gACCUAGGaaGGUCU---------------UGGUUAGAGGG- -5'
20994 3' -50.7 NC_004735.1 + 39170 0.78 0.525335
Target:  5'- -cGGAUCgagCUcCCAGAacaGCCGGUCUCCCg -3'
miRNA:   3'- gaCCUAG---GAaGGUCU---UGGUUAGAGGG- -5'
20994 3' -50.7 NC_004735.1 + 110185 0.79 0.49486
Target:  5'- uUGGAUUCUUUUAcGAUCAAUCUCCCg -3'
miRNA:   3'- gACCUAGGAAGGUcUUGGUUAGAGGG- -5'
20994 3' -50.7 NC_004735.1 + 79955 1.14 0.00409
Target:  5'- gCUGGAUCCUUCCAGAACCAAUCUCCCg -3'
miRNA:   3'- -GACCUAGGAAGGUCUUGGUUAGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.