miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20997 5' -48.5 NC_004735.1 + 102453 0.66 0.999066
Target:  5'- gCGUCGucAAGUUUUucGAcAGCAgCCCCg -3'
miRNA:   3'- -GCAGCucUUCGAAAu-CU-UUGUgGGGG- -5'
20997 5' -48.5 NC_004735.1 + 129490 0.66 0.999066
Target:  5'- ---aGAGAGGgUgugggaaaGGAAACACCCUCu -3'
miRNA:   3'- gcagCUCUUCgAaa------UCUUUGUGGGGG- -5'
20997 5' -48.5 NC_004735.1 + 45696 0.66 0.998857
Target:  5'- -uUCGGGAcGGUUgac--AACGCCCCCg -3'
miRNA:   3'- gcAGCUCU-UCGAaaucuUUGUGGGGG- -5'
20997 5' -48.5 NC_004735.1 + 371 0.67 0.997619
Target:  5'- cCGUCGGGcuGCUgcuccuccaccGACACCCUCu -3'
miRNA:   3'- -GCAGCUCuuCGAaaucu------UUGUGGGGG- -5'
20997 5' -48.5 NC_004735.1 + 110401 0.67 0.997576
Target:  5'- --aCGAGAAGCUUcAGAGGCugCa-- -3'
miRNA:   3'- gcaGCUCUUCGAAaUCUUUGugGggg -5'
20997 5' -48.5 NC_004735.1 + 29797 0.67 0.997576
Target:  5'- -uUCGAGggGCUUUuuuGAc-CGCCUCUu -3'
miRNA:   3'- gcAGCUCuuCGAAAu--CUuuGUGGGGG- -5'
20997 5' -48.5 NC_004735.1 + 39088 0.67 0.996582
Target:  5'- gCGUCGGGGuugGGgUUUGGA---ACCUCCg -3'
miRNA:   3'- -GCAGCUCU---UCgAAAUCUuugUGGGGG- -5'
20997 5' -48.5 NC_004735.1 + 62393 0.7 0.976788
Target:  5'- --cUGAGAcGCUUUccGGAGAUACCaCCCu -3'
miRNA:   3'- gcaGCUCUuCGAAA--UCUUUGUGG-GGG- -5'
20997 5' -48.5 NC_004735.1 + 24336 0.74 0.891078
Target:  5'- gCGggGAGAAGUgcugAGAccGCACCCCCg -3'
miRNA:   3'- -GCagCUCUUCGaaa-UCUu-UGUGGGGG- -5'
20997 5' -48.5 NC_004735.1 + 110903 0.74 0.883854
Target:  5'- gGUCcAGAAGU-UUGGGAAUAUCCCCu -3'
miRNA:   3'- gCAGcUCUUCGaAAUCUUUGUGGGGG- -5'
20997 5' -48.5 NC_004735.1 + 9351 0.76 0.799042
Target:  5'- uGUUGuGAAGCUgauGAccCACCCCCg -3'
miRNA:   3'- gCAGCuCUUCGAaauCUuuGUGGGGG- -5'
20997 5' -48.5 NC_004735.1 + 123070 1.14 0.006757
Target:  5'- uCGUCGAGAAGCUUUAGAAACACCCCCa -3'
miRNA:   3'- -GCAGCUCUUCGAAAUCUUUGUGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.