miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21005 5' -47.7 NC_004735.1 + 14701 0.66 0.99939
Target:  5'- aGGGAAGCaggaugugaacUCAUUUUgCUGCAGGAUGa -3'
miRNA:   3'- -UCCUUCGa----------GGUAGAA-GAUGUUCUACc -5'
21005 5' -47.7 NC_004735.1 + 123221 0.66 0.99885
Target:  5'- aAGGGAGaugaaaUCCG-CUUCcACAuaaAGAUGGg -3'
miRNA:   3'- -UCCUUCg-----AGGUaGAAGaUGU---UCUACC- -5'
21005 5' -47.7 NC_004735.1 + 72578 0.67 0.998596
Target:  5'- cGGAuaaccAGC-CCAUUUUCgUGCGGGAUGc -3'
miRNA:   3'- uCCU-----UCGaGGUAGAAG-AUGUUCUACc -5'
21005 5' -47.7 NC_004735.1 + 83233 0.67 0.997945
Target:  5'- cGGAAGCUCCucaauuUCUUCUuCGAucgGGu -3'
miRNA:   3'- uCCUUCGAGGu-----AGAAGAuGUUcuaCC- -5'
21005 5' -47.7 NC_004735.1 + 96919 0.67 0.997945
Target:  5'- aGGGGAGC--CAUCUUCUGCuacuUGGu -3'
miRNA:   3'- -UCCUUCGagGUAGAAGAUGuucuACC- -5'
21005 5' -47.7 NC_004735.1 + 20786 0.69 0.989702
Target:  5'- aAGGuAGUUaCCGUCUUUUACAAcgauuccGGUGGa -3'
miRNA:   3'- -UCCuUCGA-GGUAGAAGAUGUU-------CUACC- -5'
21005 5' -47.7 NC_004735.1 + 127472 0.69 0.988373
Target:  5'- gAGGAGGCUaUCGaacugCUUC-GCAAGGUGGc -3'
miRNA:   3'- -UCCUUCGA-GGUa----GAAGaUGUUCUACC- -5'
21005 5' -47.7 NC_004735.1 + 25845 0.7 0.980796
Target:  5'- aAGuGAAcuaCUCCAUCUUgUAgAAGAUGGa -3'
miRNA:   3'- -UC-CUUc--GAGGUAGAAgAUgUUCUACC- -5'
21005 5' -47.7 NC_004735.1 + 49378 0.71 0.970025
Target:  5'- -uGAAGCUCCAa-UUUUugAAGGUGGa -3'
miRNA:   3'- ucCUUCGAGGUagAAGAugUUCUACC- -5'
21005 5' -47.7 NC_004735.1 + 25376 0.84 0.40443
Target:  5'- -aGAAGuCUCCAUCcUCUACAGGGUGGa -3'
miRNA:   3'- ucCUUC-GAGGUAGaAGAUGUUCUACC- -5'
21005 5' -47.7 NC_004735.1 + 25678 1.13 0.009137
Target:  5'- cAGGAAGCUCCAUCUUCUACAAGAUGGa -3'
miRNA:   3'- -UCCUUCGAGGUAGAAGAUGUUCUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.