Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21005 | 5' | -47.7 | NC_004735.1 | + | 14701 | 0.66 | 0.99939 |
Target: 5'- aGGGAAGCaggaugugaacUCAUUUUgCUGCAGGAUGa -3' miRNA: 3'- -UCCUUCGa----------GGUAGAA-GAUGUUCUACc -5' |
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21005 | 5' | -47.7 | NC_004735.1 | + | 123221 | 0.66 | 0.99885 |
Target: 5'- aAGGGAGaugaaaUCCG-CUUCcACAuaaAGAUGGg -3' miRNA: 3'- -UCCUUCg-----AGGUaGAAGaUGU---UCUACC- -5' |
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21005 | 5' | -47.7 | NC_004735.1 | + | 72578 | 0.67 | 0.998596 |
Target: 5'- cGGAuaaccAGC-CCAUUUUCgUGCGGGAUGc -3' miRNA: 3'- uCCU-----UCGaGGUAGAAG-AUGUUCUACc -5' |
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21005 | 5' | -47.7 | NC_004735.1 | + | 83233 | 0.67 | 0.997945 |
Target: 5'- cGGAAGCUCCucaauuUCUUCUuCGAucgGGu -3' miRNA: 3'- uCCUUCGAGGu-----AGAAGAuGUUcuaCC- -5' |
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21005 | 5' | -47.7 | NC_004735.1 | + | 96919 | 0.67 | 0.997945 |
Target: 5'- aGGGGAGC--CAUCUUCUGCuacuUGGu -3' miRNA: 3'- -UCCUUCGagGUAGAAGAUGuucuACC- -5' |
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21005 | 5' | -47.7 | NC_004735.1 | + | 20786 | 0.69 | 0.989702 |
Target: 5'- aAGGuAGUUaCCGUCUUUUACAAcgauuccGGUGGa -3' miRNA: 3'- -UCCuUCGA-GGUAGAAGAUGUU-------CUACC- -5' |
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21005 | 5' | -47.7 | NC_004735.1 | + | 127472 | 0.69 | 0.988373 |
Target: 5'- gAGGAGGCUaUCGaacugCUUC-GCAAGGUGGc -3' miRNA: 3'- -UCCUUCGA-GGUa----GAAGaUGUUCUACC- -5' |
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21005 | 5' | -47.7 | NC_004735.1 | + | 25845 | 0.7 | 0.980796 |
Target: 5'- aAGuGAAcuaCUCCAUCUUgUAgAAGAUGGa -3' miRNA: 3'- -UC-CUUc--GAGGUAGAAgAUgUUCUACC- -5' |
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21005 | 5' | -47.7 | NC_004735.1 | + | 49378 | 0.71 | 0.970025 |
Target: 5'- -uGAAGCUCCAa-UUUUugAAGGUGGa -3' miRNA: 3'- ucCUUCGAGGUagAAGAugUUCUACC- -5' |
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21005 | 5' | -47.7 | NC_004735.1 | + | 25376 | 0.84 | 0.40443 |
Target: 5'- -aGAAGuCUCCAUCcUCUACAGGGUGGa -3' miRNA: 3'- ucCUUC-GAGGUAGaAGAUGUUCUACC- -5' |
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21005 | 5' | -47.7 | NC_004735.1 | + | 25678 | 1.13 | 0.009137 |
Target: 5'- cAGGAAGCUCCAUCUUCUACAAGAUGGa -3' miRNA: 3'- -UCCUUCGAGGUAGAAGAUGUUCUACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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