Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21008 | 3' | -43 | NC_004735.1 | + | 113126 | 0.66 | 1 |
Target: 5'- uGGAGUgaUCGAuaaCg--CGGGUAAAGGGu -3' miRNA: 3'- -CUUUA--AGCUug-GaaaGCCCAUUUCUC- -5' |
|||||||
21008 | 3' | -43 | NC_004735.1 | + | 20981 | 0.67 | 0.999999 |
Target: 5'- --uGUUUGuaAACCUguUUCGGGgAAAGAGa -3' miRNA: 3'- cuuUAAGC--UUGGA--AAGCCCaUUUCUC- -5' |
|||||||
21008 | 3' | -43 | NC_004735.1 | + | 61179 | 0.68 | 0.999997 |
Target: 5'- ---uUUUGAGCCgccgccgGGGUGGGGAGa -3' miRNA: 3'- cuuuAAGCUUGGaaag---CCCAUUUCUC- -5' |
|||||||
21008 | 3' | -43 | NC_004735.1 | + | 26077 | 0.69 | 0.999973 |
Target: 5'- -----cUGAGCCUcUUCGGG-AAGGAGu -3' miRNA: 3'- cuuuaaGCUUGGA-AAGCCCaUUUCUC- -5' |
|||||||
21008 | 3' | -43 | NC_004735.1 | + | 54176 | 0.7 | 0.999842 |
Target: 5'- ------aGAcCCUgcUUCGGGUAGAGGGg -3' miRNA: 3'- cuuuaagCUuGGA--AAGCCCAUUUCUC- -5' |
|||||||
21008 | 3' | -43 | NC_004735.1 | + | 38011 | 0.72 | 0.999309 |
Target: 5'- ------aGAACCUUgUCGGGUGGAGuGa -3' miRNA: 3'- cuuuaagCUUGGAA-AGCCCAUUUCuC- -5' |
|||||||
21008 | 3' | -43 | NC_004735.1 | + | 16167 | 0.75 | 0.992359 |
Target: 5'- aGAAAUUgucaGAGCCaUUCGGGUGGuGGAGg -3' miRNA: 3'- -CUUUAAg---CUUGGaAAGCCCAUU-UCUC- -5' |
|||||||
21008 | 3' | -43 | NC_004735.1 | + | 37822 | 1.12 | 0.035573 |
Target: 5'- gGAAAUUCGAACCUUUCGGGUAAAGAGg -3' miRNA: 3'- -CUUUAAGCUUGGAAAGCCCAUUUCUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home