miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21009 3' -43.3 NC_004735.1 + 39086 0.66 1
Target:  5'- -gUCGG-GGUUGggGUUu--GGAACCu -3'
miRNA:   3'- uaGGUCuCCAACuuUAGuuuCUUUGG- -5'
21009 3' -43.3 NC_004735.1 + 15071 0.66 1
Target:  5'- -cCCGGAGGUucauuaucguuuUGu--UCGAAGAGAUUg -3'
miRNA:   3'- uaGGUCUCCA------------ACuuuAGUUUCUUUGG- -5'
21009 3' -43.3 NC_004735.1 + 100323 0.66 0.999999
Target:  5'- -gCCAGccGGUUGAuuUCGAAcgcuucuuuGGAGCCa -3'
miRNA:   3'- uaGGUCu-CCAACUuuAGUUU---------CUUUGG- -5'
21009 3' -43.3 NC_004735.1 + 101534 0.67 0.999995
Target:  5'- cUCCGGGcaugcuGGUUGGAgcuAUUAccGAAGCCg -3'
miRNA:   3'- uAGGUCU------CCAACUU---UAGUuuCUUUGG- -5'
21009 3' -43.3 NC_004735.1 + 39472 0.68 0.99999
Target:  5'- cUUCAGAGaaaGUUGAAaacAUCAcAGAAGCUa -3'
miRNA:   3'- uAGGUCUC---CAACUU---UAGUuUCUUUGG- -5'
21009 3' -43.3 NC_004735.1 + 30254 0.68 0.999986
Target:  5'- aAUCCAGAGGgauuUGAAAgaaauGGGAUCg -3'
miRNA:   3'- -UAGGUCUCCa---ACUUUaguuuCUUUGG- -5'
21009 3' -43.3 NC_004735.1 + 90078 0.68 0.999979
Target:  5'- uUCagaGGAGGUUGGAAUgCGAucggugcGGAAACUc -3'
miRNA:   3'- uAGg--UCUCCAACUUUA-GUU-------UCUUUGG- -5'
21009 3' -43.3 NC_004735.1 + 96457 0.68 0.999972
Target:  5'- uUCCAGAuGUUGAGA--AAAGuuACCg -3'
miRNA:   3'- uAGGUCUcCAACUUUagUUUCuuUGG- -5'
21009 3' -43.3 NC_004735.1 + 9681 0.69 0.999948
Target:  5'- -gCCAGaAGGggaUGuuGUaCAGAGGAGCCg -3'
miRNA:   3'- uaGGUC-UCCa--ACuuUA-GUUUCUUUGG- -5'
21009 3' -43.3 NC_004735.1 + 28198 0.69 0.999948
Target:  5'- gAUUCAG-GGUUGAGAUUGAccugacGGAAGCg -3'
miRNA:   3'- -UAGGUCuCCAACUUUAGUU------UCUUUGg -5'
21009 3' -43.3 NC_004735.1 + 116470 0.69 0.999874
Target:  5'- -aCCGGAGGaUUGcuGUCAAucGGGAAUCc -3'
miRNA:   3'- uaGGUCUCC-AACuuUAGUU--UCUUUGG- -5'
21009 3' -43.3 NC_004735.1 + 19600 0.71 0.999273
Target:  5'- -aUUGGGGGUugaUGAAGUCAGGGuAACCu -3'
miRNA:   3'- uaGGUCUCCA---ACUUUAGUUUCuUUGG- -5'
21009 3' -43.3 NC_004735.1 + 35667 0.72 0.99831
Target:  5'- cAUUCGGAuGUcUGAAAUCAGAGAaaGACCc -3'
miRNA:   3'- -UAGGUCUcCA-ACUUUAGUUUCU--UUGG- -5'
21009 3' -43.3 NC_004735.1 + 98035 0.72 0.997946
Target:  5'- gAUCCAGAGGguaugUGAAAUaacAGGGAAUUa -3'
miRNA:   3'- -UAGGUCUCCa----ACUUUAgu-UUCUUUGG- -5'
21009 3' -43.3 NC_004735.1 + 34169 0.74 0.99312
Target:  5'- cUCCuGGGGcUUGAGAUCGuAGGGAAUCu -3'
miRNA:   3'- uAGGuCUCC-AACUUUAGU-UUCUUUGG- -5'
21009 3' -43.3 NC_004735.1 + 74775 0.75 0.989287
Target:  5'- -gUCGGAguuGGUUGAGAUCAAGGAGAa- -3'
miRNA:   3'- uaGGUCU---CCAACUUUAGUUUCUUUgg -5'
21009 3' -43.3 NC_004735.1 + 38895 1.14 0.023591
Target:  5'- cAUCCAGAGGUUGAAAUCAAAGAAACCg -3'
miRNA:   3'- -UAGGUCUCCAACUUUAGUUUCUUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.